Evidence map›Paper›PMID 32126086›Full record

ArticlePLoS neglected tropical diseases2020

Detection of dengue virus type 2 of Indian origin in acute febrile patients in rural Kenya.

Moses Muia Masika, Essi M Korhonen, Teemu Smura, Ruut Uusitalo, Katariina Vapalahti, Dufton Mwaengo, Anne J Jääskeläinen, Omu Anzala, Olli Vapalahti, Eili Huhtamo

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 3 pooled it
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 3 syntheses or guidelines pooled it, 22 citations in OpenAlex.

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  16. Clinical and epidemiologic characteristics associated with dengue fever in Mombasa, Kenya.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Moses Muia MasikaDepartment of Medical Microbiology, University of Nairobi, Nairobi, Kenya.
Essi M KorhonenDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.ORCID 0000-0003-4730-7715
Teemu SmuraDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
Ruut UusitaloDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
Katariina VapalahtiDepartment of Veterinary Biosciences, University of Helsinki, Helsinki, Finland.
Dufton MwaengoDepartment of Medical Microbiology, University of Nairobi, Nairobi, Kenya.
Anne J JääskeläinenDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
Omu AnzalaDepartment of Medical Microbiology, University of Nairobi, Nairobi, Kenya.
Olli VapalahtiDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
Eili HuhtamoDepartment of Virology, Medicum, University of Helsinki, Helsinki, Finland.
University of Helsinki · FIUniversity of Nairobi · KE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Dengue virus (DENV) has caused recent outbreaks in coastal cities of Kenya, but the epidemiological situation in other areas of Kenya is largely unknown. We investigated the role of DENV infection as a cause of acute febrile disease in non-epidemic settings in rural and urban study areas in Kenya. Altogether, 560 patients were sampled in 2016-2017 in rural Taita-Taveta County (n = 327) and urban slums of Kibera, Nairobi (n = 233). The samples were studied for DENV IgM, IgG, NS1 antigen and flaviviral RNA. IgG seroprevalence was found to be higher in Taita-Taveta (14%) than in Nairobi (3%). Five Taita-Taveta patients were positive for flaviviral RNA, all identified as DENV-2, cosmopolitan genotype. Local transmission in Taita-Taveta was suspected in a patient without travel history. The sequence analysis suggested that DENV-2 strains circulating in coastal and southern Kenya likely arose from a single introduction from India. The molecular clock analyses dated the most recent ancestor to the Kenyan strains a year before the large 2013 outbreak in Mombasa. After this, the virus has been detected in Kilifi in 2014, from our patients in Taita-Taveta in 2016, and in an outbreak in Malindi in 2017. The results highlight that silent transmission occurs between epidemics and also affects rural areas. More information is needed to understand the local epidemiological characteristics and future risks of dengue in Kenya.

Indexed as

EpidemicsGenotypeAdolescentAdultAgedAged, 80 and overAntibodies, ViralAntigens, ViralChildChild, PreschoolDengueDengue VirusDisease Transmission, InfectiousFemaleHumansKenyaAntibodies, ViralAntigens, ViralRNA, Viral

Identifiers

PMID32126086
PMCPMC7069648
OpenAlexW3009070511

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.