Evidence map›Paper›PMID 32123390›Full record

ArticleNature structural & molecular biology2020

Cryo-EM structures reveal translocational unfolding in the clostridial binary iota toxin complex.

Tomohito Yamada, Toru Yoshida, Akihiro Kawamoto, Kaoru Mitsuoka, Kenji Iwasaki, Hideaki Tsuge

Abstract read
PubMed Publisher
In one paragraph

Article in Nature structural & molecular biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
0.6field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Step-by-step maturation mechanism of the binary toxin pore revealed by cryo-EM analysis.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  20. The Importance of Therapeutically Targeting the Binary Toxin fromInternational journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Tomohito Yamada *Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0002-5828-3993
Toru Yoshida *Faculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto, Japan.ORCID http://orcid.org/0000-0002-1384-2210
Akihiro Kawamoto *Institute for Protein Research, Osaka University, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0002-7380-0127
Kaoru MitsuokaResearch Center for Ultra-High Voltage Electron Microscopy, Osaka University, Ibaraki, Osaka, Japan.
Kenji IwasakiInstitute for Protein Research, Osaka University, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0002-3808-8904
Hideaki TsugeFaculty of Life Sciences, Kyoto Sangyo University, Kamigamo-motoyama, Kita-ku, Kyoto, Japan. tsuge@cc.kyoto-su.ac.jp.ORCID http://orcid.org/0000-0003-0166-9163
Kyoto Sangyo University · JPProtein Research Foundation · JPThe University of Osaka · JPUniversity of Tsukuba · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The iota toxin produced by Clostridium perfringens type E is a binary toxin comprising two independent polypeptides: Ia, an ADP-ribosyltransferase, and Ib, which is involved in cell binding and translocation of Ia across the cell membrane. Here we report cryo-EM structures of the translocation channel Ib-pore and its complex with Ia. The high-resolution Ib-pore structure demonstrates a similar structural framework to that of the catalytic ϕ-clamp of the anthrax protective antigen pore. However, the Ia-bound Ib-pore structure shows a unique binding mode of Ia: one Ia binds to the Ib-pore, and the Ia amino-terminal domain forms multiple weak interactions with two additional Ib-pore constriction sites. Furthermore, Ib-binding induces tilting and partial unfolding of the Ia N-terminal α-helix, permitting its extension to the ϕ-clamp gate. This new mechanism of N-terminal unfolding is crucial for protein translocation.

Indexed as

ADP Ribose TransferasesAmino Acid SequenceAntigens, BacterialBacterial ToxinsBinding SitesCloning, MolecularClostridium perfringensCryoelectron MicroscopyCrystallography, X-RayEscherichia coliGene ExpressionGenetic VectorsModels, MolecularProtein BindingProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandADP Ribose Transferasesanthrax toxinAntigens, BacterialBacterial Toxinsiota toxin, Clostridium perfringensProtein SubunitsRecombinant Proteins

Identifiers

PMID32123390
OpenAlexW3010355278

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.