Evidence map›Paper›PMID 32123240›Full record

ArticleScientific reports2020

Basic Hallmarks of Urothelial Cancer Unleashed in Primary Uroepithelium by Interference with the Epigenetic Master Regulator ODC1.

Lars Erichsen, Hans-Helge Seifert, Wolfgang A Schulz, Michèle J Hoffmann, Günter Niegisch, Marcos J Araúzo-Bravo, Marcelo L Bendhack, Cedric Poyet, Thomas Hermanns, Agnes Beermann and 4 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Consistent DNA Hypomethylations in Prostate Cancer.International journal of molecular sciences · 2022
    Article
  7. Article
  8. Article
  9. Methyl Group Metabolism in Differentiation, Aging, and Cancer.International journal of molecular sciences · 2022
    Review
  10. Article
  11. Epigenetics in the Diagnosis and Therapy of Malignant Melanoma.International journal of molecular sciences · 2022
    Review
  12. Many Different LINE-1 Retroelements Are Activated in Bladder Cancer.International journal of molecular sciences · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 6 countries.

Lars ErichsenEpigenetics Core Laboratory, Institute of Transplantation Diagnostics and Cell Therapeutics, Medical Faculty, Heinrich-Heine University Duesseldorf, Moorenstr. 5, 40225, Duesseldorf, Germany.
Hans-Helge SeifertDepartment of Urology, University Hospital Basel, Basel, Switzerland.
Wolfgang A SchulzDepartment of Urology, Medical Faculty, Heinrich-Heine University Duesseldorf, Duesseldorf, Germany.
Michèle J HoffmannDepartment of Urology, Medical Faculty, Heinrich-Heine University Duesseldorf, Duesseldorf, Germany.ORCID http://orcid.org/0000-0002-6044-1671
Günter NiegischDepartment of Urology, Medical Faculty, Heinrich-Heine University Duesseldorf, Duesseldorf, Germany.
Marcos J Araúzo-BravoGroup of Computational Biology and Systems Biomedicine, Biodonostia Health Research Institute, 20014, San Sebastián, Spain.ORCID http://orcid.org/0000-0002-3264-464X
Marcelo L BendhackDepartment of Urology, University Hospital, Positivo University, Curitiba, Brazil.
Cedric PoyetDepartment of Urology, University Hospital, University of Zurich, Zurich, Switzerland.
Thomas HermannsDepartment of Urology, University Hospital, University of Zurich, Zurich, Switzerland.
Agnes BeermannEpigenetics Core Laboratory, Institute of Transplantation Diagnostics and Cell Therapeutics, Medical Faculty, Heinrich-Heine University Duesseldorf, Moorenstr. 5, 40225, Duesseldorf, Germany.
Mohamed HassanDepartment of Surgery, Tulane University School of Medicine, New Orleans, LA, 70112, USA.
Lisa TheisEpigenetics Core Laboratory, Institute of Transplantation Diagnostics and Cell Therapeutics, Medical Faculty, Heinrich-Heine University Duesseldorf, Moorenstr. 5, 40225, Duesseldorf, Germany.
Wardah MahmoodEpigenetics Core Laboratory, Institute of Transplantation Diagnostics and Cell Therapeutics, Medical Faculty, Heinrich-Heine University Duesseldorf, Moorenstr. 5, 40225, Duesseldorf, Germany.
Simeon SantourlidisEpigenetics Core Laboratory, Institute of Transplantation Diagnostics and Cell Therapeutics, Medical Faculty, Heinrich-Heine University Duesseldorf, Moorenstr. 5, 40225, Duesseldorf, Germany. simeon.santourlidis@med.uni-duesseldorf.de.ORCID http://orcid.org/0000-0002-0743-5336
Heinrich Heine University Düsseldorf · DEUniversity of Zurich · CHIkerbasque · ESTulane University · USUniversidade Positivo · BRUniversity Hospital of Basel · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Urothelial carcinoma (UC) is a common disease causing significant morbidity and mortality as well as considerable costs for health systems. Extensive aberrant methylation of DNA is broadly documented in early UC, contributing to genetic instability, altered gene expression and tumor progression. However the triggers initiating aberrant methylation are unknown. Recently we discovered that several genes encoding key enzymes of methyl group and polyamine metabolism, including Ornithine Decarboxylase 1 (ODC1), are affected by DNA methylation in early stage UC. In this study, we investigated the hypothesis that these epigenetic alterations act in a feed-forward fashion to promote aberrant DNA methylation in UC. We demonstrate that siRNA-mediated knockdown of ODC1 expression elicits genome-wide LINE-1 demethylation, induction of LINE-1 transcripts and double-strand DNA breaks and decreases viability in primary cultured uroepithelial cells. Similarly, following siRNA-mediated knockdown of ODC1, UC cells undergo double-strand DNA breaks and apoptosis. Collectively, our findings provide evidence that ODC1 gene hypermethylation could be a starting point for the onset of genome-wide epigenetic aberrations in urothelial carcinogenesis. Furthermore, LINE-1 induction enabled by ODC1 interference provides a new experimental model to study mechanisms and consequences of LINE-1 activation in the etiology and progression of UC as well as presumably other cancers.

Indexed as

Epigenesis, GeneticRNA InterferenceApoptosisCell Line, TumorCyclin-Dependent Kinase Inhibitor p21HumansOrnithine DecarboxylaseRNA, MessengerRNA, Small InterferingUrologic NeoplasmsUrotheliumCyclin-Dependent Kinase Inhibitor p21Ornithine DecarboxylaseRNA, MessengerRNA, Small Interfering

Identifiers

PMID32123240
PMCPMC7052216
OpenAlexW3009314719

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.