Evidence map›Paper›PMID 32123088›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Assessing the role of live poultry trade in community-structured transmission of avian influenza in China.

Qiqi Yang, Xiang Zhao, Philippe Lemey, Marc A Suchard, Yuhai Bi, Weifeng Shi, Di Liu, Wenbao Qi, Guogang Zhang, Nils Chr Stenseth and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed, 1 pooled it
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 1 synthesis or guideline pooled it, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 10 institutions in 5 countries.

Qiqi YangState Key Laboratory of Remote Sensing Science, College of Global Change and Earth System Science, Beijing Normal University, 100875 Beijing, China.ORCID 0000-0002-5030-0963
Xiang ZhaoNational Institute for Viral Disease Control and Prevention, Collaboration Innovation Center for Diagnosis and Treatment of Infectious Diseases, Chinese Center for Disease Control and Prevention, Key Laboratory for Medical Virology, National Health and Family Planning Commission, 102206 Beijing, China.
Philippe LemeyDepartment of Microbiology, Immunology and Transplantation, Rega Institute, Clinical and Epidemiological Virology, KU Leuven, 3000 Leuven, Belgium.ORCID 0000-0003-2826-5353
Marc A SuchardDepartment of Biomathematics, David Geffen School of Medicine, University of California, Los Angeles, CA 90095.
Yuhai BiShenzhen Key Laboratory of Pathogen and Immunity, Guangdong Key Laboratory for Diagnosis and Treatment of Emerging Infectious Diseases, State Key Discipline of Infectious Disease, Second Hospital Affiliated to Southern University of Science and Technology, Shenzhen Third People's Hospital, 518112 Shenzhen, China.
Weifeng ShiInstitute of Pathogen Biology, Taishan Medical College, 271000 Taian, Shandong, China.
Di LiuKey Laboratory of Special Pathogens and Biosafety, Wuhan Institute of Virology, Chinese Academy of Sciences, 430071 Wuhan, Hubei, China.
Wenbao QiNational and Regional Joint Engineering Laboratory for Medicament of Zoonoses Prevention and Control, College of Veterinary Medicine, South China Agricultural University, 510642 Guangzhou, China.
Guogang ZhangResearch Institute of Forest Ecology, Environment and Protection, National Bird Banding Center of China, Chinese Academy of Forestry, Key Laboratory of Forest Protection of State Forestry and Grassland Administration, 100091 Beijing, China.
Nils Chr StensethCentre for Ecological and Evolutionary Synthesis (CEES), Department of Biosciences, University of Oslo, N-0316 Oslo, Norway; n.c.stenseth@ibv.uio.no oliver.pybus@zoo.ox.ac.uk tianhuaiyu@gmail.com.
Oliver G PybusDepartment of Zoology, University of Oxford, OX1 3PS Oxford, United Kingdom; n.c.stenseth@ibv.uio.no oliver.pybus@zoo.ox.ac.uk tianhuaiyu@gmail.com.ORCID 0000-0002-8797-2667
Huaiyu TianState Key Laboratory of Remote Sensing Science, College of Global Change and Earth System Science, Beijing Normal University, 100875 Beijing, China; n.c.stenseth@ibv.uio.no oliver.pybus@zoo.ox.ac.uk tianhuaiyu@gmail.com.
Beijing Normal University · CNChinese Academy of Sciences · CNChinese Academy of Forestry · CNNational Health and Family Planning Commission · CNRega Institute for Medical Research · BERoyal Veterinary College · GBSouth China Agricultural University · CNTaishan Medical University · CNUniversity of California, Los Angeles · USUniversity of Oslo · NO

Funding

Technology CoreU19AI135995 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI Kristian Graugaard Andersen · 2018 to 2026
$32.0M
NIAID NIH HHS U19 AI135995
6 · The paper itself

Abstract

The live poultry trade is thought to play an important role in the spread and maintenance of highly pathogenic avian influenza A viruses (HP AIVs) in Asia. Despite an abundance of small-scale observational studies, the role of the poultry trade in disseminating AIV over large geographic areas is still unclear, especially for developing countries with complex poultry production systems. Here we combine virus genomes and reconstructed poultry transportation data to measure and compare the spatial spread in China of three key subtypes of AIV: H5N1, H7N9, and H5N6. Although it is difficult to disentangle the contribution of confounding factors, such as bird migration and spatial distance, we find evidence that the dissemination of these subtypes among domestic poultry is geographically continuous and likely associated with the intensity of the live poultry trade in China. Using two independent data sources and network analysis methods, we report a regional-scale community structure in China that might explain the spread of AIV subtypes in the country. The identification of this structure has the potential to inform more targeted strategies for the prevention and control of AIV in China.

Indexed as

AnimalsChinaGenome, ViralHumansInfluenza A Virus, H5N1 SubtypeInfluenza A Virus, H7N9 SubtypeInfluenza in BirdsPhylogeographyPoultryTransportationavian influenzacommunity-structured transmissionphylogeographypoultry trade

Identifiers

PMID32123088
PMCPMC7084072
OpenAlexW3004551878

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.