Evidence map›Paper›PMID 32123087›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

SOX4-mediated repression of specific tRNAs inhibits proliferation of human glioblastoma cells.

Jianjing Yang, Derek K Smith, Haoqi Ni, Ke Wu, Dongdong Huang, Sishi Pan, Adwait A Sathe, Yu Tang, Meng-Lu Liu, Chao Xing and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 32 citations in OpenAlex.

  1. Pooled it
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  18. tRNA Function and Dysregulation in Cancer.Frontiers in cell and developmental biology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Jianjing YangDepartment of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China 325000.
Derek K SmithDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Haoqi NiDepartment of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China 325000.
Ke WuDepartment of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China 325000.
Dongdong HuangDepartment of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China 325000.
Sishi PanDepartment of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China 325000.
Adwait A SatheMcDermott Center of Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Yu TangDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Meng-Lu LiuDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390.
Chao XingMcDermott Center of Human Growth and Development, University of Texas Southwestern Medical Center, Dallas, TX 75390.ORCID 0000-0002-1838-0502
Chun-Li ZhangDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390; Chun-Li.Zhang@UTSouthwestern.edu zhugeqichuan@vip.163.com.
Qichuan ZhugeDepartment of Neurosurgery, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang, China 325000; Chun-Li.Zhang@UTSouthwestern.edu zhugeqichuan@vip.163.com.
Wenzhou Medical University · CNThe University of Texas Southwestern Medical Center · USSouthwestern Medical Center · US

Funding

Induced Adult Neurogenesis for Parkinson's DiseaseR01NS092616 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2016 to 2020
$2.4M
Chemical Reprogramming of Traumatic Brain InjuryR01NS099073 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2017 to 2021
$1.8M
In Vivo Reprogramming of Glial Fate for Spinal Cord RepairR01NS088095 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2014 to 2018
$1.7M
Reprogramming the Human Glioma GenomeR21NS093502 · NINDS · UT SOUTHWESTERN MEDICAL CENTER · PI ZHANG, CHUN-LI · 2015 to 2016
$445k
NINDS NIH HHS R01 NS088095NINDS NIH HHS R01 NS092616NINDS NIH HHS R01 NS099073NINDS NIH HHS R21 NS093502
6 · The paper itself

Abstract

Transfer RNAs (tRNAs) are products of RNA polymerase III (Pol III) and essential for mRNA translation and ultimately cell growth and proliferation. Whether and how individual tRNA genes are specifically regulated is not clear. Here, we report that SOX4, a well-known Pol II-dependent transcription factor that is critical for neurogenesis and reprogramming of somatic cells, also directly controls, unexpectedly, the expression of a subset of tRNA genes and therefore protein synthesis and proliferation of human glioblastoma cells. Genome-wide location analysis through chromatin immunoprecipitation-sequencing uncovers specific targeting of SOX4 to a subset of tRNA genes, including those for

Indexed as

Cell ProliferationBrain NeoplasmsCell Line, TumorDNA Polymerase IIIGlioblastomaHEK293 CellsHumansRNA, TransferSOXC Transcription FactorsTATA-Box Binding ProteinDNA Polymerase IIIRNA, TransferSOX4 protein, humanSOXC Transcription FactorsTATA-Box Binding ProteinTBP protein, humanglioblastomamRNA translationSOX4tRNA expressiontRNAiMet

Identifiers

PMID32123087
PMCPMC7084149
OpenAlexW3010125916

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.