Evidence map›Paper›PMID 32122294›Full record

ArticleBMC genomics2020

Genome-wide discovery, and computational and transcriptional characterization of an AIG gene family in the freshwater snail Biomphalaria glabrata, a vector for Schistosoma mansoni.

Lijun Lu, Eric S Loker, Si-Ming Zhang, Sarah K Buddenborg, Lijing Bu

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 50 citations in OpenAlex.

  1. Article
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  3. Upregulated small GTPase immunity-associated proteins confer resistance toFrontiers in cellular and infection microbiology · 2025
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  13. PeerJ · 2022
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  14. Single individual structural variant detection uncovers widespread hemizygosity in molluscs.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2021
    Article
  15. Mitochondrial genome ofCurrent research in parasitology & vector-borne diseases · 2021
    Article
  16. Article
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Lijun LuCenter for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA.
Eric S LokerCenter for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA.
Si-Ming ZhangCenter for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA.
Sarah K BuddenborgWellcome Sanger Institute, Wellcome Trust Genome Campus, Hinxton, CB10 1SA, UK.
Lijing BuCenter for Evolutionary and Theoretical Immunology, Department of Biology, University of New Mexico, Albuquerque, NM, 87131, USA. lijing@unm.edu.ORCID http://orcid.org/0000-0001-8625-2732
University of New Mexico · USWellcome Sanger Institute · GB

Funding

Pilot Project ProgramP30GM110907 · NIGMS · UNIVERSITY OF NEW MEXICO · PI MILLER, ROBERT D · 2014 to 2018
$5.4M
Snail-Related Studies of Transmission & Control of Schistosomiasis in KenyaR37AI101438 · NIAID · UNIVERSITY OF NEW MEXICO · PI ERIC SAMUEL LOKER · 2017 to 2026
$3.7M
Genomic basis of anti-schistosome resistance in snailsR21AI132953 · NIAID · UNIVERSITY OF NEW MEXICO · PI ZHANG, SI-MING · 2019 to 2020
$430k
NIAID NIH HHS R21 AI132953NIAID NIH HHS R37 AI101438NIGMS NIH HHS P30 GM110907
6 · The paper itself

Abstract

backgroundThe AIG (avrRpt2-induced gene) family of GTPases, characterized by the presence of a distinctive AIG1 domain, is mysterious in having a peculiar phylogenetic distribution, a predilection for undergoing expansion and loss, and an uncertain functional role, especially in invertebrates. AIGs are frequently represented as GIMAPs (GTPase of the immunity associated protein family), characterized by presence of the AIG1 domain along with coiled-coil domains. Here we provide an overview of the remarkably expanded AIG repertoire of the freshwater gastropod Biomphalaria glabrata, compare it with AIGs in other organisms, and detail patterns of expression in B. glabrata susceptible or resistant to infection with Schistosoma mansoni, responsible for the neglected tropical disease of intestinal schistosomiasis.

resultsWe define the 7 conserved motifs that comprise the AIG1 domain in B. glabrata and detail its association with at least 7 other domains, indicative of functional versatility of B. glabrata AIGs. AIG genes were usually found in tandem arrays in the B. glabrata genome, suggestive of an origin by segmental gene duplication. We found 91 genes with complete AIG1 domains, including 64 GIMAPs and 27 AIG genes without coiled-coils, more than known for any other organism except Danio (with > 100). We defined expression patterns of AIG genes in 12 different B. glabrata organs and characterized whole-body AIG responses to microbial PAMPs, and of schistosome-resistant or -susceptible strains of B. glabrata to S. mansoni exposure. Biomphalaria glabrata AIG genes clustered with expansions of AIG genes from other heterobranch gastropods yet showed unique lineage-specific subclusters. Other gastropods and bivalves had separate but also diverse expansions of AIG genes, whereas cephalopods seem to lack AIG genes.

conclusionsThe AIG genes of B. glabrata exhibit expansion in both numbers and potential functions, differ markedly in expression between strains varying in susceptibility to schistosomes, and are responsive to immune challenge. These features provide strong impetus to further explore the functional role of AIG genes in the defense responses of B. glabrata, including to suppress or support the development of medically relevant S. mansoni parasites.

Indexed as

Amino Acid MotifsAnimalsBiomphalariaComputational BiologyDisease VectorsEvolution, MolecularGene Expression ProfilingGene Expression RegulationGTP PhosphohydrolasesMultigene FamilyProtein DomainsWhole Genome SequencingGTP PhosphohydrolasesAIG1 domainAIG geneBiomphalaria glabrataCoiled-coilConserved motifGene expressionGIMAPIANInvertebrateMolluscaSchistosoma mansoni

Identifiers

PMID32122294
PMCPMC7053062
OpenAlexW3010910173

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.