Evidence map›Paper›PMID 32117646›Full record

ArticlePeerJ2020

Transcriptome analysis of flavonoid biosynthesis in safflower flowers grown under different light intensities.

Chaoxiang Ren, Jie Wang, Bin Xian, Xiaohui Tang, Xuyun Liu, Xueli Hu, Zunhong Hu, Yiyun Wu, Cuiping Chen, Qinghua Wu and 2 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Chaoxiang RenCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.ORCID 0000-0002-0151-1713
Jie WangCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Bin XianCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Xiaohui TangCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Xuyun LiuIndustrial Crop Institute of Yunnan Academy of Agricultural Sciences, Yunnan, China.
Xueli HuIndustrial Crop Institute of Yunnan Academy of Agricultural Sciences, Yunnan, China.
Zunhong HuIndustrial Crop Institute of Yunnan Academy of Agricultural Sciences, Yunnan, China.
Yiyun WuCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Cuiping ChenCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Qinghua WuCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Jiang ChenCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Jin PeiCollege of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, China.
Chengdu University of Traditional Chinese Medicine · CNYunnan Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSafflower (

methodsThe transcriptome of safflower flowers grown under different light intensities were sequenced through BGISEQ-500 platform. After assembled and filtered, Unigenes were annotated by aligning with seven functional databases. Differential expression analysis of two samples was performed with the DEseq2 package. Differentially expressed genes (DEGs) related with flavonoids biosynthesis were analyzed by Real-time PCR (RT-PCR). Flavonoids accumulation in flowers were determined by high performance liquid chromatography and spectrophotometer.

resultsTranscriptome analysis of safflower flowers cultivated under different light intensities was performed. A total of 99.16 Gb data were obtained, and 78,179 Unigenes were annotated. Among the DEGs, 13 genes were related to flavonoid biosynthesis. The differential expressions of seven key genes were confirmed by RT-PCR. In addition, the levels of some flavonoids were measured in safflower flowers grown under different light intensities.

conclusionOur results strongly suggested that the reduction in light intensity in a suitable range promoted flavonoid biosynthesis in safflower flowers. We suggest that the expressions of

Indexed as

Flavonoid biosynthesisLight intensitySafflowerTranscriptome

Identifiers

PMID32117646
PMCPMC7039124
OpenAlexW3007294739

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.