Evidence map›Paper›PMID 32117609›Full record

ArticlePeerJ2020

High-throughput sequencing analysis identified microRNAs associated with egg production in ducks ovaries.

Mohan Qiu, Zengrong Zhang, Xia Xiong, Huarui Du, Qingyun Li, Chunlin Yu, Wu Gan, Hehe Liu, Han Peng, Bo Xia and 6 more

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.2field-weighted citation impact, top 58% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 2 institutions in 1 country.

Mohan Qiu *Sichuan Animal Science Academy, Chengdu, China.
Zengrong Zhang *Sichuan Animal Science Academy, Chengdu, China.
Xia XiongSichuan Animal Science Academy, Chengdu, China.
Huarui DuSichuan Animal Science Academy, Chengdu, China.
Qingyun LiSichuan Animal Science Academy, Chengdu, China.
Chunlin YuSichuan Animal Science Academy, Chengdu, China.
Wu GanShanghai Ying Biotechnology Company, Shanghai, China.
Hehe LiuSichuan Agricultural University, Sichuan, China.
Han PengSichuan Animal Science Academy, Chengdu, China.
Bo XiaSichuan Animal Science Academy, Chengdu, China.
Jialei ChenSichuan Animal Science Academy, Chengdu, China.
Chenming HuSichuan Animal Science Academy, Chengdu, China.
Xiaoyan SongSichuan Animal Science Academy, Chengdu, China.
Li YangSichuan Animal Science Academy, Chengdu, China.
Xiaosong JiangSichuan Animal Science Academy, Chengdu, China.
Chaowu YangSichuan Animal Science Academy, Chengdu, China.
Sichuan Animal Science Academy · CNSichuan Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMicroRNAs (miRNAs) exist widely and are involved in multiple biological processes in ducks, whereas the regulatory mechanism of miRNAs in egg laying of ducks has remained unclear. This study aims to reveal key miRNAs involved in the regulation of egg production in duck ovaries.

methodsHigh-throughput sequencing was performed on four egg-type duck ovaries and four egg-meat-type duck ovaries at the start of the egg-laying stage. Quantitative reverse transcription PCR (qRT-PCR) validation was performed on differentially expressed miRNAs (DE miRNAs). Gene network of DEmiRNA-mRNA-pathway was constructed by Cytoscape.

resultsA total of 251 know miRNAs and 1,972 novel miRNAs were obtained from whole clean reads. Among the known miRNAs, we identified 21 DEmiRNAs, including eight down-regulated and 13 up-regulated miRNAs in egg-type ducks compared with egg-meat-type ducks. Among the novel miRNAs, we identified 70 DEmiRNAs, including 58 down-regulated and 12 up-regulated in egg-type ducks compared with egg-meat-type ducks. The expression patterns of four miRNAs were verified by qRT-PCR. The DEmiRNAs were involved in the function of response to folic acid and the pathway of valine, leucine and isoleucine degradation. Specific target genes of DEmiRNAs enrichment was found in some egg-laying regulation pathways, such as dopaminergic synapse, ovarian steroidogenesis and oocyte meiosis. The DEmiRNA-mRNA-pathway network including three DEmiRNAs, nine mRNAs and 11 pathways. apl-miR-194-5p and apl-miR-215-5p may be potential key miRNAs in regulating egg laying.

conclusionsThis study provided miRNAs profiles in ducks about egg laying and establish a theoretical basis for subsequent selection or modification of duck phenotypes at the molecular level.

Indexed as

DuckEgg layingmiRNAsOvaryRNA sequencing

Identifiers

PMID32117609
PMCPMC7006514
OpenAlexW3005186407

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.