Evidence map›Paper›PMID 32117338›Full record

ArticleFrontiers in plant science2019

Genetic Mapping of the Incompatibility Locus in Olive and Development of a Linked Sequence-Tagged Site Marker.

Roberto Mariotti, Alice Fornasiero, Soraya Mousavi, Nicolò G M Cultrera, Federico Brizioli, Saverio Pandolfi, Valentina Passeri, Martina Rossi, Gabriele Magris, Simone Scalabrin and 7 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  4. Review
  5. Article
  6. First genetic maps development and QTL mining inFrontiers in plant science · 2022
    Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. EST-SNP Study ofGenes · 2020
    Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

Roberto MariottiCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Alice FornasieroInstitute of Applied Genomics, Udine, Italy.
Soraya MousaviCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Nicolò G M CultreraCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Federico BrizioliCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Saverio PandolfiCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Valentina PasseriCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Martina RossiCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Gabriele MagrisInstitute of Applied Genomics, Udine, Italy.
Simone ScalabrinIGA Technology Services, Udine, Italy.
Davide ScaglioneIGA Technology Services, Udine, Italy.
Gabriele Di GasperoInstitute of Applied Genomics, Udine, Italy.
Pierre Saumitou-LapradeUniversity of Lille, CNRS, UMR 8198 - Evo-Eco-Paleo, F-59000, Lille, France.
Philippe VernetUniversity of Lille, CNRS, UMR 8198 - Evo-Eco-Paleo, F-59000, Lille, France.
Fiammetta AlagnaENEA - Trisaia Research Centre, Rotondella, Italy.
Michele MorganteInstitute of Applied Genomics, Udine, Italy.
Luciana BaldoniCNR - Institute of Biosciences and Bioresources (IBBR), Perugia, Italy.
Institute of Biosciences and Bioresources · ITIstituto di Genomica Applicata · ITCentre National de la Recherche Scientifique · FRNational Agency for New Technologies, Energy and Sustainable Economic Development · ITUniversity of Udine · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The genetic control of self-incompatibility (SI) has been recently disclosed in olive. Inter-varietal crossing confirmed the presence of only two incompatibility groups (G1 and G2), suggesting a simple Mendelian inheritance of the trait. A double digest restriction associated DNA (ddRAD) sequencing of a biparental population segregating for incompatibility groups has been performed and high-density linkage maps were constructed in order to map the SI locus and identify gene candidates and linked markers. The progeny consisted of a full-sib family of 229 individuals derived from the cross 'Leccino' (G1) × 'Dolce Agogia' (G2) varieties, segregating 1:1 (G1:G2), in accordance with a diallelic self-incompatibility (DSI) model. A total of 16,743 single nucleotide polymorphisms was identified, 7,006 in the female parent 'Leccino' and 9,737 in the male parent 'Dolce Agogia.' Each parental map consisted of 23 linkage groups and showed an unusual large size (5,680 cM in 'Leccino' and 3,538 cM in 'Dolce Agogia'). Recombination was decreased across all linkage groups in pollen mother cells of 'Dolce Agogia,' the parent with higher heterozygosity, compared to megaspore mother cells of 'Leccino,' in a context of a species that showed exceptionally high recombination rates. A subset of 109 adult plants was assigned to either incompatibility group by a stigma test and the diallelic self-incompatibility (DSI) locus was mapped to an interval of 5.4 cM on linkage group 18. This region spanned a size of approximately 300 Kb in the olive genome assembly. We developed a sequence-tagged site marker in the DSI locus and identified five haplotypes in 57 cultivars with known incompatibility group assignment. A combination of two single-nucleotide polymorphisms (SNPs) was sufficient to predict G1 or G2 phenotypes in olive cultivars, enabling early marker-assisted selection of compatible genotypes and allowing for a rapid screening of inter-compatibility among cultivars in order to guarantee effective fertilization and increase olive production. The construction of high-density linkage maps has led to the development of the first functional marker in olive and provided positional candidate genes in the SI locus.

Indexed as

double digest restriction associated deoxyribonucleic acid sequencingfunctional markersgenetic mapOlea europaeaself-incompatibility

Identifiers

PMID32117338
PMCPMC7025539
OpenAlexW3004254131

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.