Evidence map›Paper›PMID 32117186›Full record

ArticleFrontiers in microbiology2020

Metabolic Implications of Using BioOrthogonal Non-Canonical Amino Acid Tagging (BONCAT) for Tracking Protein Synthesis.

Katherine F Steward, Brian Eilers, Brian Tripet, Amanda Fuchs, Michael Dorle, Rachel Rawle, Berliza Soriano, Narayanaganesh Balasubramanian, Valérie Copié, Brian Bothner and 1 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Katherine F StewardDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Brian EilersDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Brian TripetDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Amanda FuchsDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Michael DorleDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Rachel RawleDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Berliza SorianoDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Narayanaganesh BalasubramanianDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Valérie CopiéDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Brian BothnerDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Roland HatzenpichlerDepartment of Chemistry and Biochemistry, Montana State University, Bozeman, MT, United States.
Montana State University · US

Funding

Research Core (Developmental Research Project Program)P20GM103474 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Jeffrey Good · 2012 to 2026
$60.0M
Acquisition of a 600 MHz NMR cryoprobe and 600 MHz spectrometer console upgradeS10RR026659 · NCRR · MONTANA STATE UNIVERSITY - BOZEMAN · PI COPIE, VALERIE · 2011 to 2011
$600k
NCRR NIH HHS S10 RR026659NIGMS NIH HHS P20 GM103474
6 · The paper itself

Abstract

BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT) is a powerful tool for tracking protein synthesis on the level of single cells within communities and whole organisms. A basic premise of BONCAT is that the non-canonical amino acids (NCAA) used to track translational activity do not significantly alter cellular physiology. If the NCAA would induce changes in the metabolic state of cells, interpretation of BONCAT studies could be challenging. To address this knowledge-gap, we have used a global metabolomics analyses to assess the intracellular effects of NCAA incorporation. Two NCAA were tested:

Indexed as

BONCATL-azidohomoalanineL-homopropargylglycinemetabolomicsnon-canonical amino acids

Identifiers

PMID32117186
PMCPMC7031258
OpenAlexW3005856434

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.