Evidence map›Paper›PMID 32114025›Full record

ArticleBiochimica et biophysica acta. General subjects2020

BamA is required for autotransporter secretion.

David Ryoo, Marcella Orwick Rydmark, Yui Tik Pang, Karl P Lundquist, Dirk Linke, James C Gumbart

Open access · greenAbstract read
In one paragraph

Article in Biochimica et biophysica acta. General subjects, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Protein import and export across the bacterial outer membrane.Current opinion in structural biology · 2021
    Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

David RyooInterdisciplinary Bioengineering Graduate Program, Georgia Institute of Technology, Atlanta, GA 30332, United States of America.
Marcella Orwick RydmarkDepartment of Biosciences, University of Oslo, Oslo, Norway.
Yui Tik PangSchool of Physics, Georgia Institute of Technology, Atlanta, GA 30313, United States of America.
Karl P LundquistDepartment of Biological Sciences, Purdue University, West Lafayette, IN 47907, United States of America.
Dirk LinkeDepartment of Biosciences, University of Oslo, Oslo, Norway.
James C GumbartSchool of Physics, Georgia Institute of Technology, Atlanta, GA 30313, United States of America. Electronic address: gumbart@physics.gatech.edu.
Georgia Institute of Technology · USUniversity of Oslo · NOPurdue University West Lafayette · US

Funding

Dynamic characterization of outer-membrane-protein biogenesis by the BAM and TAM complexesR01GM123169 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI GUMBART, JAMES C. · 2017 to 2021
$1.4M
NIGMS NIH HHS R01 GM123169
6 · The paper itself

Abstract

backgroundIn Gram-negative bacteria, type Va and Vc autotransporters are proteins that contain both a secreted virulence factor (the "passenger" domain) and a β-barrel that aids its export. While it is known that the folding and insertion of the β-barrel domain utilize the β-barrel assembly machinery (BAM) complex, how the passenger domain is secreted and folded across the membrane remains to be determined. The hairpin model states that passenger domain secretion occurs independently through the fully-formed and membrane-inserted β-barrel domain via a hairpin folding intermediate. In contrast, the BamA-assisted model states that the passenger domain is secreted through a hybrid of BamA, the essential subunit of the BAM complex, and the β-barrel domain of the autotransporter.

methodsTo ascertain the models' plausibility, we have used molecular dynamics to simulate passenger domain secretion for two autotransporters, EspP and YadA.

resultsWe observed that each protein's β-barrel is unable to accommodate the secreting passenger domain in a hairpin configuration without major structural distortions. Additionally, the force required for secretion through EspP's β-barrel is more than that through the BamA β-barrel.

conclusionsSecretion of autotransporters most likely occurs through an incompletely formed β-barrel domain of the autotransporter in conjunction with BamA. GENERAL SIGNIFICANCE: Secretion of virulence factors is a process used by practically all pathogenic Gram-negative bacteria. Understanding this process is a necessary step towards limiting their infectious capacity.

Indexed as

Models, MolecularProtein FoldingBacterial Outer Membrane ProteinsBiological TransportEscherichia coliEscherichia coli ProteinsHumansSerine EndopeptidasesType V Secretion SystemsBacterial Outer Membrane ProteinsBamA protein, E coliEscherichia coli ProteinsEspP protein, E coliSerine EndopeptidasesType V Secretion SystemsAutotransportersMembrane proteinsMolecular dynamicsSecretion systems

Identifiers

PMID32114025
PMCPMC7196024
OpenAlexW3007133217

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.