Evidence map›Paper›PMID 32111915›Full record

ArticleScientific reports2020

Integrated RNA and metabolite profiling of urine liquid biopsies for prostate cancer biomarker discovery.

Bongyong Lee, Iqbal Mahmud, John Marchica, Paweł Dereziński, Feng Qi, Fubo Wang, Piyush Joshi, Felipe Valerio, Inoel Rivera, Vipul Patel and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.2field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 61 citations in OpenAlex.

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  16. Cellular Signaling of Amino Acid Metabolism in Prostate Cancer.International journal of molecular sciences · 2025
    Review
  17. Article
  18. Liquid Biopsy in the Clinical Management of Cancers.International journal of molecular sciences · 2024
    Review
  19. The role of GOT1 in cancer metabolism.Frontiers in oncology · 2024
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 10 institutions in 3 countries.

Bongyong LeeCancer and Blood Disorders Institute, Johns Hopkins All Children's Hospital, 600 6th Avenue South, St. Petersburg, FL, 33701, USA.
Iqbal MahmudDepartment Pathology, Immunology and Laboratory Medicine, University of Florida, College of Medicine, 1395 Center Drive, Gainesville, FL, 32610, USA.
John MarchicaCancer and Blood Disorders Institute, Johns Hopkins All Children's Hospital, 600 6th Avenue South, St. Petersburg, FL, 33701, USA.
Paweł DerezińskiDepartment of Inorganic and Analytical Chemistry, Poznan University of Medical Sciences, Grunwaldzka 6 Street, 60-780, Poznan, Poland.
Feng QiSanford Burnham Prebys Medical Discovery Institute, 10901 N Torrey Pines Rd, La Jolla, CA, 92037, USA.
Fubo WangDepartment of Urology, Shanghai Changhai Hospital, Second Military Medical University, 168 Changhai Road, Shanghai, China.
Piyush JoshiCancer and Blood Disorders Institute, Johns Hopkins All Children's Hospital, 600 6th Avenue South, St. Petersburg, FL, 33701, USA.
Felipe ValerioFlorida Urology Associates, 1812 N. Mills Avenue, Orlando, FL, 32803, USA.
Inoel RiveraFlorida Urology Associates, 1812 N. Mills Avenue, Orlando, FL, 32803, USA.
Vipul PatelGlobal Robotics Institute, 410 Celebration Place, Suite 200, Celebration, FL, 34747, USA.
Christian P PavlovichThe James Buchanan Brady Urological Institute, Department of Urology, The Johns Hopkins University School of Medicine, 4940 Eastern Avenue, Baltimore, MD, 21224, USA.
Timothy J GarrettDepartment Pathology, Immunology and Laboratory Medicine, University of Florida, College of Medicine, 1395 Center Drive, Gainesville, FL, 32610, USA.
Gary P SchrothIllumina, Inc., 5200 Illumina Way, San Diego, CA, 92122, USA.
Yinghao SunDepartment of Urology, Shanghai Changhai Hospital, Second Military Medical University, 168 Changhai Road, Shanghai, China.
Ranjan J PereraCancer and Blood Disorders Institute, Johns Hopkins All Children's Hospital, 600 6th Avenue South, St. Petersburg, FL, 33701, USA. jperera2@jhmi.edu.
Florida Urology Associates · USJohns Hopkins University · USSanford Burnham Prebys Medical Discovery Institute · USSecond Military Medical University · CNUniversity of Florida · USAdventHealth Celebration · USDiscovery Institute · USIllumina (United States) · USJohns Hopkins All Children's Hospital · USPoznan University of Medical Sciences · PL

Funding

Translational Research Central ServicesP30CA006973 · NCI · JOHNS HOPKINS UNIVERSITY · PI Rosalie Wollett · 1985 to 2026
$208.6M
Tumor Microenvironment and Cancer ImmunologyP30CA030199 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI Michael Jackson · 1985 to 2026
$107.2M
Southeast Resource Center for Integrated Metabolomics (SECIM)U24DK097209 · NIDDK · UNIVERSITY OF FLORIDA · PI EDISON, ARTHUR S, YOST, RICHARD A. · 2013 to 2017
$9.2M
NCI NIH HHS P30 CA006973NCI NIH HHS P30 CA030199NIDDK NIH HHS U24 DK097209
6 · The paper itself

Abstract

Sensitive and specific diagnostic and prognostic biomarkers for prostate cancer (PCa) are urgently needed. Urine samples are a non-invasive means to obtain abundant and readily accessible "liquid biopsies". Herein we used urine liquid biopsies to identify and characterize a novel group of urine-enriched RNAs and metabolites in patients with PCa and normal individuals with or without benign prostatic disease. Differentially expressed RNAs were identified in urine samples by deep sequencing and metabolites in urine were measured by mass spectrometry. mRNA and metabolite profiles were distinct in patients with benign and malignant disease. Integrated analysis of urinary gene expression and metabolite signatures unveiled an aberrant glutamate metabolism and tricarboxylic acid (TCA) cycle node in prostate cancer-derived cells. Functional validation supported a role for glutamate metabolism and glutamate oxaloacetate transaminase 1 (GOT1)-dependent redox balance in PCa, which could be exploited for novel biomarkers and therapies. In this study, we discovered cancer-specific changes in urinary RNAs and metabolites, paving the way for the development of sensitive and specific urinary PCa diagnostic biomarkers either alone or in combination. Our methodology was based on single void urine samples (i.e., without prostatic massage). The integrated analysis of metabolomic and transcriptomic data from these liquid biopsies revealed a glutamate metabolism and tricarboxylic acid cycle node that was specific to prostate-derived cancer cells and cancer-specific metabolic changes in urine.

Indexed as

Biomarkers, TumorCitric Acid CycleGlutamic AcidHumansLiquid BiopsyMaleProstateProstatic NeoplasmsRNA, MessengerBiomarkers, TumorGlutamic AcidRNA, Messenger

Identifiers

PMID32111915
PMCPMC7048821
OpenAlexW3009846508

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.