Evidence map›Paper›PMID 32111691›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus.

Vincent W Wu, Nils Thieme, Lori B Huberman, Axel Dietschmann, David J Kowbel, Juna Lee, Sara Calhoun, Vasanth R Singan, Anna Lipzen, Yi Xiong and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 70 papers.

0numbers the graph read from it
0cells of the map it votes in
70citing papers in PubMed
15.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

70 citing papers in PubMed, 138 citations in OpenAlex.

  1. Article
  2. Barcoded mutant library enables high-throughput functional genomics in a filamentous fungus.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  3. Article
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  9. The genome-scale sugar metabolic model fromCurrent research in microbial sciences · 2026
    Article
  10. Article
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  12. Review
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  14. Article
  15. The SUbventral-Gland Regulator (SUGR-1) of nematode virulence.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

10 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Vincent W WuDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Nils ThiemeHolzforschung München, Technical University of Munich School of Life Sciences Weihenstephan, Technical University of Munich, 85354 Freising, Germany.
Lori B HubermanDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Axel DietschmannHolzforschung München, Technical University of Munich School of Life Sciences Weihenstephan, Technical University of Munich, 85354 Freising, Germany.
David J KowbelDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Juna LeeUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Sara CalhounUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Vasanth R SinganUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Anna LipzenUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Yi XiongDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
Remo MontiUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Matthew J BlowUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Ronan C O'MalleyUS Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Igor V GrigorievDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720.
J Philipp BenzHolzforschung München, Technical University of Munich School of Life Sciences Weihenstephan, Technical University of Munich, 85354 Freising, Germany.ORCID 0000-0001-5361-4514
N Louise GlassDepartment of Plant and Microbial Biology, University of California, Berkeley, CA 94720; lglass@berkeley.edu.ORCID 0000-0002-4844-2890
Lawrence Berkeley National Laboratory · USEnergy Biosciences Institute · USTechnical University of Munich · DEUniversity of California, Berkeley · US

Funding

Tools for Functional Analysis and Cell BiologyP01GM068087 · NIGMS · DARTMOUTH COLLEGE · PI DUNLAP, JAY C. · 2004 to 2013
$19.3M
POSTGRADUATE TRAINING PROGRAM IN GENETICST32GM007127 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 1985 to 2016
$7.9M
NIGMS NIH HHS P01 GM068087NIGMS NIH HHS T32 GM007127
6 · The paper itself

Abstract

Filamentous fungi, such as

Indexed as

BiofuelsBiomassCatabolite RepressionCell WallFungal ProteinsGene Expression Regulation, FungalMetabolic EngineeringMetabolic Networks and PathwaysNeurospora crassaPectinsPolysaccharidesRNA-SeqTranscription FactorsBiofuelsFungal ProteinshemicellulosePectinsPolysaccharidesTranscription FactorsDAP-seqnutrient sensingplant biomass deconstructionRNA-seqtranscriptional networks

Identifiers

PMID32111691
PMCPMC7084071
OpenAlexW3008990042

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.