Evidence map›Paper›PMID 32111085›Full record

ArticleMicroorganisms2020

Clustering of Bacterial Growth Dynamics in Response to Growth Media by Dynamic Time Warping.

Yang-Yang Cao, Tetsuya Yomo, Bei-Wen Ying

Abstract read
In one paragraph

Article in Microorganisms, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yang-Yang CaoSoftware Engineering Institute, East China Normal University, 3663 Zhong Shan Road (N), Shanghai 200062, China.
Tetsuya YomoSchool of Life Science, East China Normal University, 3663 Zhong Shan Road (N), Shanghai 200062, China.
Bei-Wen YingFaculty of Life and Environmental Sciences, University of Tsukuba, 1-1-1 Tennoudai, Tsukuba, Ibaraki 305-8572, Japan.

Funding

Japan Society for the Promotion of Science 19H03215
6 · The paper itself

Abstract

Bacterial growth curves, representing population dynamics, are still poorly understood. The growth curves are commonly analyzed by model-based theoretical fitting, which is limited to typical S-shape fittings and does not elucidate the dynamics in their entirety. Thus, whether a certain growth condition results in any particular pattern of growth curve remains unclear. To address this question, up-to-date data mining techniques were applied to bacterial growth analysis for the first time. Dynamic time warping (DTW) and derivative DTW (DDTW) were used to compare the similarity among 1015 growth curves of 28

Indexed as

bacterial growth dynamicsdata miningdynamic time warping (DTW)growth curvehierarchal clusteringmedium

Identifiers

PMID32111085
PMCPMC7143780

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.