Evidence map›Paper›PMID 32110330›Full record

ArticleChemical science2019

Revealing the transient conformations of a single flavin adenine dinucleotide using an aerolysin nanopore.

Meng-Yin Li, Ya-Qian Wang, Yi-Lun Ying, Yi-Tao Long

Open access · diamondAbstract read
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Article in Chemical science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 33 citations in OpenAlex.

  1. Article
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  3. Comparing ultrafast excited state quenching of flavin 1,NPhotochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Meng-Yin LiState Key Laboratory of Analytical Chemistry for Life Science , School of Chemistry and Chemical Engineering , 210023 , Nanjing , P. R. China . Email: yitaolong@nju.edu.cn.
Ya-Qian WangSchool of Chemistry and Molecule Engineering , East China University of Science and Technology , 200237 , Shanghai , P. R. China.
Yi-Lun YingState Key Laboratory of Analytical Chemistry for Life Science , School of Chemistry and Chemical Engineering , 210023 , Nanjing , P. R. China . Email: yitaolong@nju.edu.cn.ORCID 0000-0001-6217-256X
Yi-Tao LongState Key Laboratory of Analytical Chemistry for Life Science , School of Chemistry and Chemical Engineering , 210023 , Nanjing , P. R. China . Email: yitaolong@nju.edu.cn.ORCID 0000-0003-2571-7457
East China University of Science and Technology · CNState Key Laboratory of Analytical Chemistry for Life Science

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flavin adenine dinucleotide (FAD) as a cofactor is involved in numerous important metabolic pathways where the biological function is intrinsically related to its transient conformations. The confined space of enzymes requires FAD set in its specific intermediate conformation. However, conventional methods only detect stable conformations of FAD molecules, while transient intermediates are hidden in ensemble measurements. There still exists a challenge to uncover the transient conformation of each FAD molecule, which hinders the understanding of the structure-activity relationship of the FAD mechanism. Here, we employ the electrochemically confined space of an aerolysin nanopore to directly characterize a series of transient conformations of every individual FAD. Based on distinguishable current blockages, the "stack", "open", and four quasi-stacked FADs are clearly determined in solution, which is further confirmed by temperature-dependent experiments and mutant aerolysin assay. Combined with molecular dynamics simulations, we achieved a direct correlation between the residual current ratio (

Identifiers

PMID32110330
PMCPMC6988595
OpenAlexW2973784288

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.