Evidence map›Paper›PMID 32109420›Full record

ArticleAmerican journal of human genetics2020

De Novo Variants in SPOP Cause Two Clinically Distinct Neurodevelopmental Disorders.

Maria J Nabais Sá, Geniver El Tekle, Arjan P M de Brouwer, Sarah L Sawyer, Daniela Del Gaudio, Michael J Parker, Farah Kanani, Marie-José H van den Boogaard, Koen van Gassen, Margot I Van Allen and 13 more

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Functional dissection ofProceedings of the National Academy of Sciences of the United States of America · 2026
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  7. Article
  8. Ocular manifestations of Nabais Sa-de Vries Syndrome type 1.International journal of molecular epidemiology and genetics · 2022
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 13 institutions in 5 countries.

Maria J Nabais SáDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Geniver El TekleFunctional Cancer Genomics, Institute of Oncology Research, 6500 Bellinzona, Switzerland; Faculty of Biomedical Science, Università della Svizzera Italiana, 6900 Lugano, Switzerland; University of Lausanne, 1015 Lausanne, Switzerland.
Arjan P M de BrouwerDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Sarah L SawyerDepartment of Genetics, Children's Hospital of Eastern Ontario and Children's Hospital of Eastern Ontario Research Institute, University of Ottawa, Ottawa, ON K1H 8L1, Canada.
Daniela Del GaudioMolecular Diagnostic Laboratory, Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Michael J ParkerDepartment of Clinical Genetics, Sheffield Children's NHS Foundation Trust, Sheffield S10 2TH, UK.
Farah KananiDepartment of Clinical Genetics, Sheffield Children's NHS Foundation Trust, Sheffield S10 2TH, UK.
Marie-José H van den BoogaardDepartment of Genetics, UMC Utrecht, 3584 CX Utrecht, the Netherlands.
Koen van GassenDepartment of Genetics, UMC Utrecht, 3584 CX Utrecht, the Netherlands.
Margot I Van AllenDepartment of Medical Genetics, University of British Columbia, Vancouver, BC V6H 3N1, Canada.
Klaas WierengaUniversity of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Gabriela PurcarinUniversity of Oklahoma Health Sciences Center, Oklahoma City, OK 73104, USA.
Ellen Roy EliasSpecial Care Clinic, Children's Hospital Colorado, Aurora, CO 80011, USA; University of Colorado School of Medicine, Aurora, CO 80045, USA.
Amber BegtrupGeneDx, Gaithersburg, MD 20877, USA.
Jennifer Keller-RameyGeneDx, Gaithersburg, MD 20877, USA.
Tiziano BernasocchiFunctional Cancer Genomics, Institute of Oncology Research, 6500 Bellinzona, Switzerland; Faculty of Biomedical Science, Università della Svizzera Italiana, 6900 Lugano, Switzerland; University of Lausanne, 1015 Lausanne, Switzerland.
Laurens van de WielCenter for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Christian GilissenDepartment of Human Genetics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Hanka VenselaarCenter for Molecular and Biomolecular Informatics, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Rolph PfundtDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Lisenka E L M VissersDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands.
Jean-Philippe P TheurillatFunctional Cancer Genomics, Institute of Oncology Research, 6500 Bellinzona, Switzerland; Faculty of Biomedical Science, Università della Svizzera Italiana, 6900 Lugano, Switzerland. Electronic address: jean-philippe.theurillat@ior.usi.ch.
Bert B A de VriesDepartment of Human Genetics, Donders Institute for Brain, Cognition and Behavior, Radboud University Medical Center, 6525 GA Nijmegen, the Netherlands. Electronic address: bert.devries@radboudumc.nl.
University Medical Center · USInstitute of Oncology Research · CHRadboud University Medical Center · NLSheffield Children's NHS Foundation Trust · GBUniversity Medical Center Utrecht · NLUniversity of Oklahoma Health Sciences Center · USRadboud Institute for Molecular Life Sciences · NLRadboud University Nijmegen · NLUniversità della Svizzera italiana · CHUniversity of British Columbia · CAUniversity of Chicago · USUniversity of Colorado Denver · USUniversity of Ottawa · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recurrent somatic variants in SPOP are cancer specific; endometrial and prostate cancers result from gain-of-function and dominant-negative effects toward BET proteins, respectively. By using clinical exome sequencing, we identified six de novo pathogenic missense variants in SPOP in seven individuals with developmental delay and/or intellectual disability, facial dysmorphisms, and congenital anomalies. Two individuals shared craniofacial dysmorphisms, including congenital microcephaly, that were strikingly different from those of the other five individuals, who had (relative) macrocephaly and hypertelorism. We measured the effect of SPOP variants on BET protein amounts in human Ishikawa endometrial cancer cells and patient-derived cell lines because we hypothesized that variants would lead to functional divergent effects on BET proteins. The de novo variants c.362G>A (p.Arg121Gln) and c. 430G>A (p.Asp144Asn), identified in the first two individuals, resulted in a gain of function, and conversely, the c.73A>G (p.Thr25Ala), c.248A>G (p.Tyr83Cys), c.395G>T (p.Gly132Val), and c.412C>T (p.Arg138Cys) variants resulted in a dominant-negative effect. Our findings suggest that these opposite functional effects caused by the variants in SPOP result in two distinct and clinically recognizable syndromic forms of intellectual disability with contrasting craniofacial dysmorphisms.

Indexed as

Mutation, MissenseAdolescentChildChild, PreschoolFaciesFemaleHumansInfantIntellectual DisabilityMaleNeurodevelopmental DisordersNuclear ProteinsRepressor ProteinsSkullYoung AdultNuclear ProteinsRepressor ProteinsSPOP protein, humanBET proteincraniofacial dysmorphismsde novo mutationgerm line mutationintellectual disabilty syndromemacrocephalymicrocephalymissense mutationneurodevelopmental disorderSPOP

Identifiers

PMID32109420
PMCPMC7058825
OpenAlexW3007654857

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.