Evidence map›Paper›PMID 32109266›Full record

ArticlePloS one2020

Genomic characterisation of Salmonella enterica serovar Wangata isolates obtained from different sources reveals low genomic diversity.

Kelly M J Simpson, Siobhan M Mor, Michael P Ward, Julie Collins, James Flint, Grant A Hill-Cawthorne, Moataz Abd El Ghany

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Kelly M J SimpsonSchool of Veterinary Science, Faculty of Science, University of Sydney, Camden and Camperdown, Sydney, New South Wales, Australia.ORCID 0000-0001-6779-0893
Siobhan M MorSchool of Veterinary Science, Faculty of Science, University of Sydney, Camden and Camperdown, Sydney, New South Wales, Australia.
Michael P WardSchool of Veterinary Science, Faculty of Science, University of Sydney, Camden and Camperdown, Sydney, New South Wales, Australia.
Julie CollinsHunter New England Population Health, Wallsend, New South Wales, Australia.ORCID 0000-0002-0673-3649
James FlintHunter New England Population Health, Wallsend, New South Wales, Australia.
Grant A Hill-CawthorneWestmead Institute for Medical Research, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead, New South Wales, Australia.ORCID 0000-0002-3828-5473
Moataz Abd El GhanyWestmead Institute for Medical Research, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Westmead, New South Wales, Australia.
The University of Sydney · AUAustralian National University · AUHunter New England Local Health District · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salmonella enterica serovar Wangata is an important pathogen in New South Wales (NSW), Australia. The incidence of S. Wangata is increasing and transmission is suspected to be via a non-food source. A recent outbreak investigation of sources of S. Wangata recovered isolates from humans, domestic animals, wildlife and the environment. Here, we extend that investigation by characterising and describing the genomic determinates of these isolates. We found that Australian S. Wangata isolates from different sources exhibited similar virulence and antimicrobial resistance gene profiles. There were no major genomic differences between isolates obtained from different geographical regions within Australia or from different host species. In addition, we found evidence (low number of SNPs and identical virulence gene profiles) suggestive of an international transmission event between Australia and the United Kingdom. This study supports the hypothesis that S. Wangata is shared between different hosts in NSW, Australia and provides strong justification for the continued use of genomic surveillance of Salmonella.

Indexed as

Genetic VariationGenome, BacterialSerogroupAnimalsHumansNew South WalesPhylogenySalmonella entericaWhole Genome Sequencing

Identifiers

PMID32109266
PMCPMC7048276
OpenAlexW3008760695

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.