Evidence map›Paper›PMID 32109059›Full record

ArticleJournal of medicinal chemistry2020

Re-Evaluating the Mechanism of Action of α,β-Unsaturated Carbonyl DUB Inhibitors b-AP15 and VLX1570: A Paradigmatic Example of Unspecific Protein Cross-linking with Michael Acceptor Motif-Containing Drugs.

Jennifer A Ward, Adan Pinto-Fernandez, Loïc Cornelissen, Sarah Bonham, Laura Díaz-Sáez, Olivier Riant, Kilian V M Huber, Benedikt M Kessler, Olivier Feron, Edward W Tate

Open access · hybridAbstract read
In one paragraph

Article in Journal of medicinal chemistry, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 40 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Article
  9. Deubiquitinases in cancer.Nature reviews. Cancer · 2023
    Review
  10. Review
  11. Article
  12. Article
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  14. Article
  15. Article
  16. Article
  17. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Jennifer A WardStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7DQ, U.K.ORCID 0000-0002-8735-5263
Adan Pinto-FernandezTarget Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7FZ, U.K.
Loïc CornelissenInstitute of Condensed Matter and Nanosciences, MOST Division, Place Louis Pasteur, UCLouvain, Louvain-la-Neuve B-1348, Belgium.
Sarah BonhamTarget Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7FZ, U.K.
Laura Díaz-SáezStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7DQ, U.K.
Olivier RiantInstitute of Condensed Matter and Nanosciences, MOST Division, Place Louis Pasteur, UCLouvain, Louvain-la-Neuve B-1348, Belgium.ORCID 0000-0003-4852-6469
Kilian V M HuberStructural Genomics Consortium, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7DQ, U.K.ORCID 0000-0002-1103-5300
Benedikt M KesslerTarget Discovery Institute, Nuffield Department of Medicine, University of Oxford, Oxford OX3 7FZ, U.K.
Olivier FeronPole of Pharmacology and Therapeutics (FATH), Institut de Recherche Expérimentale et Clinique (IREC), UCLouvain, 57 Avenue Hippocrate B1.57.04, Brussels B-1200, Belgium.
Edward W TateDepartment of Chemistry, Imperial College London, Molecular Sciences Research Hub, White City Campus, London W12 0BZ, U.K.ORCID 0000-0003-2213-5814
Nuffield Orthopaedic Centre · GBUCLouvain · BEDirectorate-General Joint Research Centre · BELondon Biofoundry · GB

Funding

Medical Research Council G0501068Wellcome TrustWellcome Trust 106169/ZZ14/Z
6 · The paper itself

Abstract

Deubiquitinating enzymes (DUBs) are a growing target class across multiple disease states, with several inhibitors now reported. b-AP15 and VLX1570 are two structurally related USP14/UCH-37 inhibitors. Through a proteomic approach, we demonstrate that these compounds target a diverse range of proteins, resulting in the formation of higher molecular weight (MW) complexes. Activity-based proteome profiling identified CIAPIN1 as a submicromolar covalent target of VLX1570, and further analysis demonstrated that high MW complex formation leads to aggregation of CIAPIN1 in intact cells. Our results suggest that in addition to DUB inhibition, these compounds induce nonspecific protein aggregation, providing molecular explanation for general cellular toxicity.

Indexed as

AzepinesBenzylidene CompoundsCell Line, TumorCross-Linking ReagentsDeubiquitinating EnzymesEnzyme InhibitorsHumansIntracellular Signaling Peptides and ProteinsPiperidonesProtein MultimerizationProteomeProteomics3,5-bis((4-nitrophenyl)methylidene)-1-prop-2-enoylpiperidin-4-oneAzepinesBenzylidene CompoundsCIAPIN1 protein, humanCross-Linking ReagentsDeubiquitinating EnzymesEnzyme InhibitorsIntracellular Signaling Peptides and ProteinsPiperidonesProteomeVLX1570

Identifiers

PMID32109059
PMCPMC7152998
OpenAlexW3007701837

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.