Evidence map›Paper›PMID 32108411›Full record

ArticleAngewandte Chemie (International ed. in English)2020

Phenotyping Reveals Targets of a Pseudo-Natural-Product Autophagy Inhibitor.

Daniel J Foley, Sarah Zinken, Dale Corkery, Luca Laraia, Axel Pahl, Yao-Wen Wu, Herbert Waldmann

Open access · hybridAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Review
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  6. Article
  7. Article
  8. Tumor biomarkers for diagnosis, prognosis and targeted therapy.Signal transduction and targeted therapy · 2024
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Identification of a Novel Pseudo-Natural Product Type IV IDO1 Inhibitor Chemotype.Angewandte Chemie (International ed. in English) · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Pseudonatural Products Occur Frequently in Biologically Relevant Compounds.Journal of chemical information and modeling · 2021
    Article
  18. Synthesis of Indofulvin Pseudo-Natural Products Yields a New Autophagy Inhibitor Chemotype.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2021
    Article
  19. Article
  20. Dynamic Catalytic Highly Enantioselective 1,3-Dipolar Cycloadditions.Angewandte Chemie (International ed. in English) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 5 countries.

Daniel J FoleyMax Planck Institute of Molecular Physiology, Dortmund, Germany.ORCID 0000-0001-6221-3333
Sarah ZinkenMax Planck Institute of Molecular Physiology, Dortmund, Germany.
Dale CorkeryDepartment of Chemistry, Umeå Centre for Microbial Research, Umeå University, Umeå, Sweden.ORCID 0000-0001-7930-0134
Luca LaraiaMax Planck Institute of Molecular Physiology, Dortmund, Germany.ORCID 0000-0001-6692-3412
Axel PahlMax Planck Institute of Molecular Physiology, Dortmund, Germany.
Yao-Wen WuDepartment of Chemistry, Umeå Centre for Microbial Research, Umeå University, Umeå, Sweden.ORCID 0000-0002-2573-8736
Herbert WaldmannMax Planck Institute of Molecular Physiology, Dortmund, Germany.ORCID 0000-0002-9606-7247
TU Dortmund University · DEUmeå University · SEDenmark Technical College · USUniversity of Canterbury · NZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudo-natural-product (NP) design combines natural product fragments to provide unprecedented NP-inspired compounds not accessible by biosynthesis, but endowed with biological relevance. Since the bioactivity of pseudo-NPs may be unprecedented or unexpected, they are best evaluated in target agnostic cell-based assays monitoring entire cellular programs or complex phenotypes. Here, the Cinchona alkaloid scaffold was merged with the indole ring system to synthesize indocinchona alkaloids by Pd-catalyzed annulation. Exploration of indocinchona alkaloid bioactivities in phenotypic assays revealed a novel class of azaindole-containing autophagy inhibitors, the azaquindoles. Subsequent characterization of the most potent compound, azaquindole-1, in the morphological cell painting assay, guided target identification efforts. In contrast to the parent Cinchona alkaloids, azaquindoles selectively inhibit starvation- and rapamycin-induced autophagy by targeting the lipid kinase VPS34.

Indexed as

AutophagyBiological ProductsCatalysisClass III Phosphatidylinositol 3-KinasesDrug DesignEnzyme InhibitorsHumansMCF-7 CellsPalladiumBiological ProductsClass III Phosphatidylinositol 3-KinasesEnzyme InhibitorsPalladiumalkaloidsautophagychemical biologyinhibitorsnatural products

Identifiers

PMID32108411
PMCPMC7383971
OpenAlexW3007141693

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.