Evidence map›Paper›PMID 32108359›Full record

ArticleJournal of medical virology2020

Development of epitope-based peptide vaccine against novel coronavirus 2019 (SARS-COV-2): Immunoinformatics approach.

Manojit Bhattacharya, Ashish R Sharma, Prasanta Patra, Pratik Ghosh, Garima Sharma, Bidhan C Patra, Sang-Soo Lee, Chiranjib Chakraborty

Abstract read
In one paragraph

Article in Journal of medical virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 214 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
214citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

214 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  12. Screening of Natural Compounds as Inhibitor of MCurrent pharmaceutical design · 2025
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154 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Manojit BhattacharyaInstitute for Skeletal Aging and Orthopedic Surgery, Hallym University-Chuncheon Sacred Heart Hospital, Chuncheon-si, Gangwon-do, Republic of Korea.ORCID 0000-0001-9669-1835
Ashish R SharmaInstitute for Skeletal Aging and Orthopedic Surgery, Hallym University-Chuncheon Sacred Heart Hospital, Chuncheon-si, Gangwon-do, Republic of Korea.ORCID 0000-0003-3973-6755
Prasanta PatraDepartment of Zoology, Vidyasagar University, Midnapore, West Bengal, India.ORCID 0000-0003-3901-8569
Pratik GhoshDepartment of Zoology, Vidyasagar University, Midnapore, West Bengal, India.ORCID 0000-0001-8117-7681
Garima SharmaNeuropsychopharmacology and Toxicology Program, College of Pharmacy, Kangwon National University, Chuncheon, Republic of Korea.ORCID 0000-0003-1763-0730
Bidhan C PatraDepartment of Zoology, Vidyasagar University, Midnapore, West Bengal, India.ORCID 0000-0002-9188-7457
Sang-Soo LeeInstitute for Skeletal Aging and Orthopedic Surgery, Hallym University-Chuncheon Sacred Heart Hospital, Chuncheon-si, Gangwon-do, Republic of Korea.ORCID 0000-0001-5074-7581
Chiranjib ChakrabortyInstitute for Skeletal Aging and Orthopedic Surgery, Hallym University-Chuncheon Sacred Heart Hospital, Chuncheon-si, Gangwon-do, Republic of Korea.ORCID 0000-0002-3958-239X

Funding

Hallym University Research FundNational Research Foundation of Korea (NRF) NRF-2017R1A2B4012944
6 · The paper itself

Abstract

Recently, a novel coronavirus (SARS-COV-2) emerged which is responsible for the recent outbreak in Wuhan, China. Genetically, it is closely related to SARS-CoV and MERS-CoV. The situation is getting worse and worse, therefore, there is an urgent need for designing a suitable peptide vaccine component against the SARS-COV-2. Here, we characterized spike glycoprotein to obtain immunogenic epitopes. Next, we chose 13 Major Histocompatibility Complex-(MHC) I and 3 MHC-II epitopes, having antigenic properties. These epitopes are usually linked to specific linkers to build vaccine components and molecularly dock on toll-like receptor-5 to get binding affinity. Therefore, to provide a fast immunogenic profile of these epitopes, we performed immunoinformatics analysis so that the rapid development of the vaccine might bring this disastrous situation to the end earlier.

Indexed as

Amino Acid SequenceBetacoronavirusBinding SitesComputational BiologyCoronavirus InfectionsCOVID-19COVID-19 VaccinesEpitopesEpitopes, B-LymphocyteEpitopes, T-LymphocyteHistocompatibility Antigens Class IHistocompatibility Antigens Class IIHumansMiddle East Respiratory Syndrome CoronavirusMolecular Docking SimulationPandemicsCOVID-19 VaccinesEpitopesEpitopes, B-LymphocyteEpitopes, T-LymphocyteHistocompatibility Antigens Class IHistocompatibility Antigens Class IISpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2TLR5 protein, humanToll-Like Receptor 5Vaccines, SubunitViral VaccinesepitopesimmunoinformaticsSARS-COV-2vaccine

Identifiers

PMID32108359
PMCPMC7228377

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.