Evidence map›Paper›PMID 32108139›Full record

ArticleScientific reports2020

Complete genome and methylome analysis of Neisseria meningitidis associated with increased serogroup Y disease.

Bianca Stenmark, Odile B Harrison, Lorraine Eriksson, Brian P Anton, Alexey Fomenkov, Richard J Roberts, Ave Tooming-Klunderud, Holly B Bratcher, James E Bray, Sara Thulin-Hedberg and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Bianca StenmarkDepartment of Laboratory Medicine, Faculty of Medicine and Health, Örebro University, Örebro, Sweden. bianca.stenmark@regionorebrolan.se.
Odile B HarrisonDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Lorraine ErikssonDepartment of Laboratory Medicine, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.
Brian P AntonNew England Biolabs, Ipswich, Massachusetts, USA.
Alexey FomenkovNew England Biolabs, Ipswich, Massachusetts, USA.
Richard J RobertsNew England Biolabs, Ipswich, Massachusetts, USA.
Ave Tooming-KlunderudCentre for Ecological and Evolutionary Synthesis, Department of Biosciences, University of Oslo, Oslo, Norway.
Holly B BratcherDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
James E BrayDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Sara Thulin-HedbergDepartment of Laboratory Medicine, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.
Martin C J MaidenDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
Paula MöllingDepartment of Laboratory Medicine, Faculty of Medicine and Health, Örebro University, Örebro, Sweden.
Örebro University · SEUniversity of Oxford · GBNew England Biolabs (United States) · USUniversity of Oslo · NO

Funding

Wellcome TrustWellcome Trust 218205/Z/19/Z
6 · The paper itself

Abstract

Invasive meningococcal disease (IMD) due to serogroup Y Neisseria meningitidis emerged in Europe during the 2000s. Draft genomes of serogroup Y isolates in Sweden revealed that although the population structure of these isolates was similar to other serogroup Y isolates internationally, a distinct strain (YI) and more specifically a sublineage (1) of this strain was responsible for the increase of serogroup Y IMD in Sweden. We performed single molecule real-time (SMRT) sequencing on eight serogroup Y isolates from different sublineages to unravel the genetic and epigenetic factors delineating them, in order to understand the serogroup Y emergence. Extensive comparisons between the serogroup Y sublineages of all coding sequences, complex genomic regions, intergenic regions, and methylation motifs revealed small point mutations in genes mainly encoding hypothetical and metabolic proteins, and non-synonymous variants in genes involved in adhesion, iron acquisition, and endotoxin production. The methylation motif CACNNNNNTAC was only found in isolates of sublineage 2. Only seven genes were putatively differentially expressed, and another two genes encoding hypothetical proteins were only present in sublineage 2. These data suggest that the serogroup Y IMD increase in Sweden was most probably due to small changes in genes important for colonization and transmission.

Indexed as

EpigenomeGenome, BacterialDNA, BacterialDNA MethylationHumansMeningitis, MeningococcalNeisseria meningitidis, Serogroup YSwedenDNA, Bacterial

Identifiers

PMID32108139
PMCPMC7046676
OpenAlexW3010354991

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.