Evidence map›Paper›PMID 32107876›Full record

ArticleMicrobiologyOpen2020

Proteomic analysis of Aspergillus niger 3.316 under heat stress.

Xiangyu Deng, Bin Du, Fengmei Zhu, Yanan Gao, Jun Li

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. LC/MS Q-TOF Metabolomic Investigation of Amino Acids and Dipeptides inJournal of agricultural and food chemistry · 2022
    Article
  5. Article
  6. Journal of fungi (Basel, Switzerland) · 2021
    Article
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Xiangyu DengHebei Normal University of Science and Technology, College of Food Science and Technology, Qinhuangdao, China.ORCID 0000-0002-7092-3711
Bin DuHebei Normal University of Science and Technology, College of Food Science and Technology, Qinhuangdao, China.
Fengmei ZhuHebei Normal University of Science and Technology, College of Food Science and Technology, Qinhuangdao, China.
Yanan GaoHebei Normal University of Science and Technology, College of Food Science and Technology, Qinhuangdao, China.
Jun LiHebei Normal University of Science and Technology, College of Food Science and Technology, Qinhuangdao, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

β-Glucosidase production by Aspergillus niger is accompanied by an inevitable temperature increase in the industrial fermentation environment. Hence, the synthetic process of β-glucosidase is negatively affected. However, our understanding of the heat stress response (HSR) mechanism in A. niger is still incomplete. The current study explored the intracellular proteome profile of A. niger 3.316 in group T (50°C stress) and group C (30°C control) using two proteomic approaches (isobaric tags for relative and absolute quantitation [iTRAQ] and label-free) and examined the expression of four proteins using a parallel reaction monitoring (PRM) approach. Based on the result of the iTRAQ proteomic analysis, 1,025 proteins were differentially expressed in group T compared to group C. Using the label-free approach, we only focused on 77 proteins with significant changes in their protein expression levels. In addition, we performed bioinformatics analysis on all these proteins and obtained detailed gene ontology (GO) enrichment and Kyoto encyclopedia of genes and genomes (KEGG) pathway results. Under heat stress conditions, the relative expression levels of proteins with protection and repair functions were upregulated in A. niger 3.316. These proteins were involved in metabolic pathways, oxidative phosphorylation, porphyrin and chlorophyll metabolism, pyruvate metabolism, and the citrate cycle (TCA cycle). The insights obtained from the presented proteomics and bioinformatics analyses can be used to further explore the HSR mechanism of A. niger.

Indexed as

Aspergillus nigerFungal ProteinsGene OntologyHeat-Shock ResponseMetabolic Networks and PathwaysProteomeProteomicsFungal ProteinsProteomeAspergillus nigerbioinformatics analysisheat stressiTRAQparallel reaction monitoringproteomics

Identifiers

PMID32107876
PMCPMC7221434

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.