Evidence map›Paper›PMID 32106567›Full record

ArticleViruses2020

Preliminary Identification of Potential Vaccine Targets for the COVID-19 Coronavirus (SARS-CoV-2) Based on SARS-CoV Immunological Studies.

Syed Faraz Ahmed, Ahmed A Quadeer, Matthew R McKay

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 621 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
621citing papers in PubMed, 1 pooled it
29.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

621 citing papers in PubMed, 1 synthesis or guideline pooled it, 1,209 citations in OpenAlex.

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  15. Intranasal Multiepitope PD-L1-siRNA-Based Nanovaccine: The Next-Gen COVID-19 Immunotherapy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
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561 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Syed Faraz AhmedDepartment of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, China.ORCID 0000-0002-6086-0307
Ahmed A QuadeerDepartment of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, China.
Matthew R McKayDepartment of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong, China.
Hong Kong University of Science and Technology · HK

Funding

Research Grants Council, University Grants Committee 16204519
6 · The paper itself

Abstract

The beginning of 2020 has seen the emergence of COVID-19 outbreak caused by a novel coronavirus, Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2). There is an imminent need to better understand this new virus and to develop ways to control its spread. In this study, we sought to gain insights for vaccine design against SARS-CoV-2 by considering the high genetic similarity between SARS-CoV-2 and SARS-CoV, which caused the outbreak in 2003, and leveraging existing immunological studies of SARS-CoV. By screening the experimentally-determined SARS-CoV-derived B cell and T cell epitopes in the immunogenic structural proteins of SARS-CoV, we identified a set of B cell and T cell epitopes derived from the spike (S) and nucleocapsid (N) proteins that map identically to SARS-CoV-2 proteins. As no mutation has been observed in these identified epitopes among the 120 available SARS-CoV-2 sequences (as of 21 February 2020), immune targeting of these epitopes may potentially offer protection against this novel virus. For the T cell epitopes, we performed a population coverage analysis of the associated MHC alleles and proposed a set of epitopes that is estimated to provide broad coverage globally, as well as in China. Our findings provide a screened set of epitopes that can help guide experimental efforts towards the development of vaccines against SARS-CoV-2.

Indexed as

BetacoronavirusCoronavirus InfectionsCoronavirus Nucleocapsid ProteinsCOVID-19COVID-19 VaccinesEpitope MappingEpitopes, B-LymphocyteEpitopes, T-LymphocyteGenome, ViralHumansNucleocapsid ProteinsPhosphoproteinsPhylogenyPneumonia, ViralProtein Structure, TertiarySARS-CoV-2Coronavirus Nucleocapsid ProteinsCOVID-19 VaccinesEpitopes, B-LymphocyteEpitopes, T-Lymphocytenucleocapsid phosphoprotein, SARS-CoV-2Nucleocapsid ProteinsPhosphoproteinsSpike Glycoprotein, CoronavirusViral Vaccines2019-nCoV2019 novel coronavirusB cell epitopesCoronavirusCOVID-19MERS-CoVSARS-CoVSARS-CoV-2T cell epitopesvaccine

Identifiers

PMID32106567
PMCPMC7150947
OpenAlexW3007886991

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.