Evidence map›Paper›PMID 32103374›Full record

ArticleClinical rheumatology2020

A novel variant near LSP1P3 is associated with knee osteoarthritis in the Chinese population.

Yetian Li, Fuen Liu, Xin Xu, Hui Zhang, Ming Lu, Weilu Gao, Li Yin, Zongsheng Yin

Abstract read
PubMed Publisher
In one paragraph

Article in Clinical rheumatology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Intergenic Interactions ofLife (Basel, Switzerland) · 2023
    Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Yetian LiDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China.
Fuen LiuDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China.
Xin XuDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China.
Hui ZhangDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China.
Ming LuDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China.
Weilu GaoDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China.
Li YinDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China.
Zongsheng YinDepartment of Orthopaedics, The First Affiliated Hospital of Anhui Medical University, 218# Ji Xi Road, Hefei, 230032, Anhui, China. anhuiyzs@126.com.
Anhui Medical University · CNFirst Affiliated Hospital of Anhui Medical University · CN

Funding

National Natural Science Foundation of China 81672161
6 · The paper itself

Abstract

objectivesPrevious genome-wide association study showing a novel variant near LSP1P3 was associated with knee osteoarthritis (KOA) in Caucasians. Replication study in different populations was essential to validate the association of novel susceptible genes with KOA. To our knowledge, there is a lack of study concerning the role of the LSP1P3 gene in Chinese KOA patients. We aimed to determine the association between the novel variant near LSP1P3 gene and the susceptibility of KOA in the Chinese population and to further investigate its relationship with the severity of KOA.

methodsA total of 532 primary KOA patients who received treatment in our clinic center were included in the current study. Nine hundred twenty-seven age- and gender-matched healthy subjects were recruited as controls. The severity of KOA was graded according to the Kellgren-Lawrence (KL) grading system, with KL grade of 1 or 2 classified as mild KOA and KL grade of 3 or 4 classified as severe KOA. Three variants were genotyped using TaqMan SNP genotyping assay, including rs4867568 of LSP1P3 gene, rs143383 of GDF5, and rs1558902 of FTO. The differences in terms of genotype and allele distributions between the cases and the controls were analyzed by the chi-square test.

resultsThere were 215 male and 317 female patients with a mean age of 58.1 ± 7.2 years. According to the KL score, 172 (32.3%) patients had mild KOA and 360 (67.7%) had severe KOA. There were remarkably lower frequencies of allele T of rs4867568 and allele C of rs143383 in the patients than in the controls (31.5% vs. 36.0%, p = 0.01 for rs4867568; 24.6% vs. 28.7%, p = 0.02 for rs143383), with an OR of 0.82 and 0.81, respectively. As for rs1558902, no significant difference regarding the frequency of allele and genotype was found between the patients and the controls. Patients with severe KOA had remarkably lower incidence of genotype TT of rs4867568 than patients with mild KOA (6.7% vs. 12.2%, p = 0.04). There was significantly higher frequency of allele T in patients with mild KOA than in those with severe KOA (36.3% vs. 29.2%, p = 0.02, OR = 0.72).

conclusionsThe association of rs4867568 and rs143383 with KOA was successfully replicated in the Chinese Han population. Moreover, rs4867568 was found significantly associated with the severity of KOA. More studies are warranted to explore the functional role of rs4867568 in the development of KOA. Key Points • A novel variant near Lsp1p3 is associated with knee osteoarthritis. • Baseline characteristics of the subjects. • Comparison of the genotype and allele frequency of the Lsp1p3, GDF5, and FTO. • Association of the Lsp1p3, GDF5, and FTO with KOA severity.

Indexed as

AgedAlpha-Ketoglutarate-Dependent Dioxygenase FTOAsian PeopleCase-Control StudiesChinaFemaleGene FrequencyGenetic Predisposition to DiseaseGrowth Differentiation Factor 5HumansMaleMicrofilament ProteinsMiddle AgedOsteoarthritis, KneePolymorphism, Single NucleotideAlpha-Ketoglutarate-Dependent Dioxygenase FTOFTO protein, humanGDF5 protein, humanGrowth Differentiation Factor 5LSP1 protein, humanMicrofilament ProteinsGWASLSP1P3OsteoarthritisPolymorphism

Identifiers

PMID32103374
OpenAlexW3007113477

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.