Evidence map›Paper›PMID 32103029›Full record

ArticleScientific reports2020

Single-cell Transcriptome Mapping Identifies Common and Cell-type Specific Genes Affected by Acute Delta9-tetrahydrocannabinol in Humans.

Ying Hu, Mohini Ranganathan, Chang Shu, Xiaoyu Liang, Suhas Ganesh, Awo Osafo-Addo, Chunhua Yan, Xinyu Zhang, Bradley E Aouizerat, John H Krystal and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Review
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  9. Cannabis and Paternal Epigenetic Inheritance.International journal of environmental research and public health · 2023
    Review
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  13. Impact of ΔBiomedicines · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Ying HuCenter for Biomedical Information and Information Technology, National Cancer Institute, Rockville, MD, 20850, USA.
Mohini RanganathanDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.
Chang ShuDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0002-3730-5102
Xiaoyu LiangDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0001-7796-2441
Suhas GaneshDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.
Awo Osafo-AddoDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.
Chunhua YanCenter for Biomedical Information and Information Technology, National Cancer Institute, Rockville, MD, 20850, USA.
Xinyu ZhangDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.ORCID http://orcid.org/0000-0001-8154-9334
Bradley E AouizeratBluestone Center for Clinical Research, College of Dentistry, New York University, New York, NY, 10010, USA.
John H KrystalDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.
Deepak C D'SouzaDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA.
Ke XuDepartment of Psychiatry, Yale School of Medicine, 300 George street, Suite 901, New Haven, CT, 06511, USA. ke.xu@yale.edu.
Yale University · USNational Cancer Institute · USCenter for Clinical Research (United States) · USVA Connecticut Healthcare System · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Feature selection of DNA methylation biosignatures for neuropathy with comorbid drug abuse in the setting of HIV infectionR01DA047820 · NIDA · YALE UNIVERSITY · PI AOUIZERAT, BRADLEY E, XU, KE · 2018 to 2022
$2.9M
Defining the impact of injection drug use on antiretroviral therapy and HIV treatment outcomes: an (epi)genomic approachR01DA047063 · NIDA · YALE UNIVERSITY · PI AOUIZERAT, BRADLEY E, XU, KE · 2018 to 2022
$2.4M
Intravenous Alcohol and THC Effects on Simulated Driving and Related CognitionR21AA024257 · NIAAA · YALE UNIVERSITY · PI D'SOUZA, DEEPAK CYRIL · 2015 to 2016
$344k
NCATS NIH HHS UL1 TR001863NIAAA NIH HHS R21 AA024257NIDA NIH HHS R01 DA047063NIDA NIH HHS R01 DA047820
6 · The paper itself

Abstract

Delta-9-tetrahydrocannabinol (THC) is known to modulate immune response in peripheral blood cells. The mechanisms of THC's effects on gene expression in human immune cells remains poorly understood. Combining a within-subject design with single cell transcriptome mapping, we report that THC acutely alters gene expression in 15,973 blood cells. We identified 294 transcriptome-wide significant genes among eight cell types including 69 common genes and 225 cell-type-specific genes affected by THC administration, including those genes involving in immune response, cytokine production, cell proliferation and apoptosis. We revealed distinct transcriptomic sub-clusters affected by THC in major immune cell types where THC perturbed cell-type-specific intracellular gene expression correlations. Gene set enrichment analysis further supports the findings of THC's common and cell-type-specific effects on immune response and cell toxicity. This comprehensive single-cell transcriptomic profiling provides important insights into THC's acute effects on immune function that may have important medical implications.

Indexed as

ApoptosisB-LymphocytesCD8-Positive T-LymphocytesCell ProliferationCluster AnalysisCytokinesDronabinolGene Expression ProfilingGene Expression RegulationGene Regulatory NetworksHumansImmunity, ActiveLeukocytes, MononuclearMaleReceptor, Cannabinoid, CB2Single-Cell AnalysisCNR2 protein, humanCytokinesdelta9-tetrahydrocannabinol hemisuccinateDronabinolReceptor, Cannabinoid, CB2

Identifiers

PMID32103029
PMCPMC7044203
OpenAlexW3008241868

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.