Evidence map›Paper›PMID 32102997›Full record

ArticleNature communications2020

The role of Mediator and Little Elongation Complex in transcription termination.

Hidehisa Takahashi, Amol Ranjan, Shiyuan Chen, Hidefumi Suzuki, Mio Shibata, Tomonori Hirose, Hiroko Hirose, Kazunori Sasaki, Ryota Abe, Kai Chen and 20 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 35 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
  9. Cell-cycle-regulated transcriptional pausing ofMolecular biology of the cell · 2025
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. mRNA initiation and termination are spatially coordinated.bioRxiv : the preprint server for biology · 2024
    Article
  15. A genome-wide optical pooled screen reveals regulators of cellular antiviral responses.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. The Integrator Complex in Transcription and Development.Trends in biochemical sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 8 institutions in 2 countries.

Hidehisa TakahashiDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa, 216-0004, Japan. hide0213@yokohama-cu.ac.jp.
Amol RanjanStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.ORCID http://orcid.org/0000-0002-4198-1007
Shiyuan ChenStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Hidefumi SuzukiDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa, 216-0004, Japan.
Mio ShibataDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Kita 15, Nishi 7, Kita-ku, Sapporo, Hokkaido, 060-8638, Japan.
Tomonori HiroseDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa, 216-0004, Japan.ORCID http://orcid.org/0000-0003-2428-0919
Hiroko HiroseDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa, 216-0004, Japan.
Kazunori SasakiDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa, 216-0004, Japan.
Ryota AbeDepartment of Molecular Biology, Yokohama City University Graduate School of Medical Science, Fukuura 3-9, Kanazawa-ku, Yokohama, Kanagawa, 216-0004, Japan.
Kai ChenStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Yanfeng HeStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Ying ZhangStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Ichigaku TakigawaGraduate School of Information Science and Technology, Hokkaido University, Kita 14, Nishi 9, Kita-ku, Sapporo, Hokkaido, 060-0814, Japan.ORCID http://orcid.org/0000-0001-5633-995X
Tadasuke TsukiyamaDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Kita 15, Nishi 7, Kita-ku, Sapporo, Hokkaido, 060-8638, Japan.ORCID http://orcid.org/0000-0001-5205-8202
Masashi WatanabeDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Kita 15, Nishi 7, Kita-ku, Sapporo, Hokkaido, 060-8638, Japan.
Satoshi FujiiDepartment of Bioscience and Bioinformatics, Kyushu Institute of Technology, Iizuka, Fukuoka, 820-8502, Japan.
Midori IidaDepartment of Bioscience and Bioinformatics, Kyushu Institute of Technology, Iizuka, Fukuoka, 820-8502, Japan.
Junichi YamamotoDepartment of Nanoparticle Translational Research Tokyo Medical University, 6-7-1, Nishi-Shinjuku, Tokyo, Shinjuku-ku, 160-0023, Japan.
Yuki YamaguchiGraduate School of Bioscience and Biotechnology, Tokyo Institute of Technology, Yokohama, Kanagawa, 226-8501, Japan.
Yutaka SuzukiLaboratory of Systems Genomics, Department of Computational Biology and Medical Sciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5, Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan.
Masaki MatsumotoDepartment of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka, 812-8582, Japan.ORCID http://orcid.org/0000-0002-6987-0288
Keiichi I NakayamaDepartment of Molecular and Cellular Biology, Medical Institute of Bioregulation, Kyushu University, 3-1-1 Maidashi, Higashi-ku, Fukuoka, Fukuoka, 812-8582, Japan.
Michael P WashburnStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.ORCID http://orcid.org/0000-0001-7568-2585
Anita SarafStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Laurence FlorensStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Shigeo SatoStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Chieri Tomomori-SatoStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.ORCID http://orcid.org/0000-0002-2543-293X
Ronald C ConawayStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA.
Joan W ConawayStowers Institute for Medical Research, 1000E 50th Street, Kansas City, MO, 64110, USA. JLC@stowers.org.ORCID http://orcid.org/0000-0002-2786-0663
Shigetsugu HatakeyamaDepartment of Biochemistry, Faculty of Medicine and Graduate School of Medicine, Hokkaido University, Kita 15, Nishi 7, Kita-ku, Sapporo, Hokkaido, 060-8638, Japan. hatas@med.hokudai.ac.jp.
Stowers Institute for Medical Research · USYokohama City University · JPHokkaido University · JPKyushu Institute of Technology · JPKyushu University · JPThe University of Tokyo · JPTokyo Institute of Technology · JPTokyo Medical University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mediator is a coregulatory complex that regulates transcription of Pol II-dependent genes. Previously, we showed that human Mediator subunit MED26 plays a role in the recruitment of Super Elongation Complex (SEC) or Little Elongation Complex (LEC) to regulate the expression of certain genes. MED26 plays a role in recruiting SEC to protein-coding genes including c-myc and LEC to small nuclear RNA (snRNA) genes. However, how MED26 engages SEC or LEC to regulate distinct genes is unclear. Here, we provide evidence that MED26 recruits LEC to modulate transcription termination of non-polyadenylated transcripts including snRNAs and mRNAs encoding replication-dependent histone (RDH) at Cajal bodies. Our findings indicate that LEC recruited by MED26 promotes efficient transcription termination by Pol II through interaction with CBC-ARS2 and NELF/DSIF, and promotes 3' end processing by enhancing recruitment of Integrator or Heat Labile Factor to snRNA or RDH genes, respectively.

Indexed as

Cell Line, TumorGene Expression RegulationHCT116 CellsHEK293 CellsHeLa CellsHumansMediator ComplexNuclear ProteinsRNA Cap-Binding ProteinsRNA Polymerase IIRNA, Small NuclearTranscriptional Elongation FactorsTranscription FactorsTranscription Termination, GeneticMED26 protein, humanMediator ComplexNSMF protein, humanNuclear ProteinsRNA Cap-Binding ProteinsRNA Polymerase IIRNA, Small NuclearSRRT protein, humanSUPT5H protein, humanTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID32102997
PMCPMC7044329
OpenAlexW3008098792

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.