Evidence map›Paper›PMID 32101742›Full record

ArticleCell reports2020

The Non-dominant AAA+ Ring in the ClpAP Protease Functions as an Anti-stalling Motor to Accelerate Protein Unfolding and Translocation.

Hema Chandra Kotamarthi, Robert T Sauer, Tania A Baker

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  7. Review
  8. Article
  9. Article
  10. FtsH degrades dihydrofolate reductase by recognizing a partially folded species.Protein science : a publication of the Protein Society · 2022
    Article
  11. AAA+ proteins: one motor, multiple ways to work.Biochemical Society transactions · 2022
    Review
  12. Article
  13. Article
  14. Review
  15. Modular and coordinated activity of AAA+ active sites in the double-ring ClpA unfoldase of the ClpAP protease.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. AAA+ proteins: converging mechanisms, diverging functions.Nature structural & molecular biology · 2020
    Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Hema Chandra KotamarthiDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA, USA.
Robert T SauerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. Electronic address: bobsauer@mit.edu.
Tania A BakerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA, USA. Electronic address: tabaker@mit.edu.
Massachusetts Institute of Technology · US

Funding

Sequence Determinants of Protein Structure and StabilityR37AI015706 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SAUER, ROBERT T · 2002 to 2011
$4.7M
Protein Recognition for Remodeling and Degradation by Bacterial AAA+ ATPasesR01GM049224 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BAKER, TANIA A · 1993 to 2013
$4.0M
Sequence Determinants of Protein Structure and StabilityR01GM101988 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SAUER, ROBERT T · 2012 to 2019
$3.5M
VIRAL PROTEINS: STRUCTURE AND ASSEMBLY PATHWAYSR01AI015706 · NIAID · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SAUER, ROBERT T · 1985 to 2001
$693k
Howard Hughes Medical InstituteNIAID NIH HHS R01 AI015706NIAID NIH HHS R37 AI015706NIGMS NIH HHS R01 GM049224NIGMS NIH HHS R01 GM101988
6 · The paper itself

Abstract

ATP-powered unfoldases containing D1 and D2 AAA+ rings play important roles in protein homeostasis, but uncertainty about the function of each ring remains. Here we use single-molecule optical tweezers to assay mechanical unfolding and translocation by a variant of the ClpAP protease containing an ATPase-inactive D1 ring. This variant displays substantial mechanical defects in both unfolding and translocation of protein substrates. Notably, when D1 is hydrolytically inactive, ClpAP often stalls for times as long as minutes, and the substrate can back-slip through the enzyme when ATP concentrations are low. The inactive D1 variant also has more difficulty traveling in the N-to-C direction on a polypeptide track than it does moving in a C-to-N direction. These results indicate that D1 normally functions as an auxiliary/regulatory motor to promote uninterrupted enzyme advancement that is fueled largely by the D2 ring.

Indexed as

Protein UnfoldingAdenosine TriphosphateAmino Acid SequenceEndopeptidase ClpEscherichia coliEscherichia coli ProteinsHydrolysisProtein DomainsProtein TransportProteolysisSubstrate SpecificityAdenosine TriphosphateClpA protease, E coliClpP protease, E coliEndopeptidase ClpEscherichia coli ProteinsAAA+ proteasesATP motorsClpAPHsp104/ClpBoptical tweezersprotein degradationprotein translocationprotein unfoldingsingle-molecule force spectroscopytranslocation pauses

Identifiers

PMID32101742
PMCPMC7888974
OpenAlexW3007966208

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.