Evidence map›Paper›PMID 32101699›Full record

ArticleCell chemical biology2020

MYC Regulation of D2HGDH and L2HGDH Influences the Epigenome and Epitranscriptome.

ZhiJun Qiu, An-Ping Lin, Shoulei Jiang, Sara M Elkashef, Jamie Myers, Subramanya Srikantan, Binu Sasi, John Z Cao, Lucy A Godley, Dinesh Rakheja and 6 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.3field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 25 citations in OpenAlex.

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  13. Dynamic multilayered control of mProceedings of the National Academy of Sciences of the United States of America · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

ZhiJun QiuDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
An-Ping LinDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Shoulei JiangDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Sara M ElkashefDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Jamie MyersDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Subramanya SrikantanDivision of Nephrology, Center for Renal Precision Medicine, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Binu SasiDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
John Z CaoSection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL 60637, USA.
Lucy A GodleySection of Hematology/Oncology, Department of Medicine, The University of Chicago, Chicago, IL 60637, USA.
Dinesh RakhejaDepartment of Pathology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yingli LyuGreehey Children's Cancer Research Institute, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Siyuan ZhengGreehey Children's Cancer Research Institute, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA; Department of Epidemiology and Biostatistics, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Muniswamy MadeshDivision of Nephrology, Center for Renal Precision Medicine, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Yuzuru ShiioGreehey Children's Cancer Research Institute, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA; Department of Biochemistry, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Patricia L M DahiaDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA.
Ricardo C T AguiarDivision of Hematology and Medical Oncology, Department of Medicine, University of Texas Health Science Center San Antonio, San Antonio, TX 78229, USA; South Texas Veterans Health Care System, Audie Murphy VA Hospital, San Antonio, TX 78229, USA. Electronic address: aguiarr@uthscsa.edu.
The University of Texas Health Science Center at San Antonio · USUniversity of Chicago · USSouth Texas Veterans Health Care System · USThe University of Texas Southwestern Medical Center · US

Funding

TISSUE CULTURE---COREP30CA054174 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Lei Zheng · 1991 to 2026
$59.1M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR002645 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2018 to 2022
$20.4M
Institute for Integration of Medicine & Science: A Partnership to Improve HealthUL1TR001120 · NCATS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI CLARK, ROBERT A, HARGREAVES, KENNETH M · 2013 to 2017
$16.5M
Coordination of Pathophysiologic Endothelial Cell Signaling by ROSR01HL086699 · NHLBI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI MUNISWAMY, MADESH · 2008 to 2018
$4.3M
Spectral revelations of mitochondrial Ca2+ flux interactomeR01GM109882 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI MUNISWAMY, MADESH · 2014 to 2022
$3.3M
Control of Endothelial Mechanotransduction by the Mitochondrial Ca2+ Uniporter: Implications for AtherosclerosisR01HL142673 · NHLBI · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI ALEVRIADOU, BARBARA RITA, MUNISWAMY, MADESH · 2018 to 2021
$2.0M
Oxidative stress and RNA methylationR01ES031522 · NIEHS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI AGUIAR, RICARDO C · 2020 to 2024
$1.9M
Inhibition of MCUR1-MCU mediated mitochondrial Ca2+ uptake prevents I/R injuryR01HL119306 · NHLBI · TEMPLE UNIV OF THE COMMONWEALTH · PI MUNISWAMY, MADESH · 2014 to 2017
$1.6M
Interaction of the TMEM127 tumor suppressor with the mTORC1 lysosomal activating complexR01GM114102 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI DAHIA, PATRICIA LEAL · 2017 to 2021
$1.5M
Mitochondrial 2-hydroxyglutarate dehydrogenases modulate the cellular epitranscriptomeR01GM140456 · NIGMS · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI AGUIAR, RICARDO C · 2021 to 2024
$1.2M
Multiphoton Confocal Microscopy for Biomedical ResearchS10RR027327 · NCRR · TEMPLE UNIV OF THE COMMONWEALTH · PI MUNISWAMY, MADESH · 2010 to 2010
$500k
A novel oncogenic driver in Ewing sarcomaR21CA202485 · NCI · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI SHIIO, YUZURU · 2016 to 2017
$365k
BLRD VA I01 BX001882NCATS NIH HHS UL1 TR001120NCATS NIH HHS UL1 TR002645NCI NIH HHS P30 CA054174NCI NIH HHS R21 CA202485NCRR NIH HHS S10 RR027327NHLBI NIH HHS R01 HL086699NHLBI NIH HHS R01 HL119306NHLBI NIH HHS R01 HL142673NIEHS NIH HHS R01 ES031522NIGMS NIH HHS R01 GM109882NIGMS NIH HHS R01 GM114102NIGMS NIH HHS R01 GM140456
6 · The paper itself

Abstract

Mitochondrial D2HGDH and L2HGDH catalyze the oxidation of D-2-HG and L-2-HG, respectively, into αKG. This contributes to cellular homeostasis in part by modulating the activity of αKG-dependent dioxygenases. Signals that control the expression/activity of D2HGDH/L2HGDH are presumed to broadly influence physiology and pathology. Using cell and mouse models, we discovered that MYC directly induces D2HGDH and L2HGDH transcription. Furthermore, in a manner suggestive of D2HGDH, L2HGDH, and αKG dependency, MYC activates TET enzymes and RNA demethylases, and promotes their nuclear localization. Consistent with these observations, in primary B cell lymphomas MYC expression positively correlated with enhancer hypomethylation and overexpression of lymphomagenic genes. Together, these data provide additional evidence for the role of mitochondria metabolism in influencing the epigenome and epitranscriptome, and imply that in specific contexts wild-type TET enzymes could demethylate and activate oncogenic enhancers.

Indexed as

EpigenomeTranscriptional ActivationAlcohol OxidoreductasesAnimalsCell LineFemaleHumansLymphoma, B-CellMaleMice, Inbred C57BLProto-Oncogene Proteins c-mycTranscriptomeTumor Cells, CulturedAlcohol OxidoreductasesD2HGDH protein, humanL2HGDH protein, humanMYC protein, humanProto-Oncogene Proteins c-myc2-hydroxyglutaratealpha-ketoglutaratedioxygenasesDNA methylationenhancerlymphomametabolitesMYCRNA methylationsuper-enhancer

Identifiers

PMID32101699
PMCPMC7714266
OpenAlexW3008569405

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.