Evidence map›Paper›PMID 32101514›Full record

ArticleMicrobial genomics2020

Concordance of SNP- and allele-based typing workflows in the context of a large-scale international

Claudia E Coipan, Timothy J Dallman, Derek Brown, Hassan Hartman, Menno van der Voort, Redmar R van den Berg, Daniel Palm, Saara Kotila, Tom van Wijk, Eelco Franz

Abstract read
In one paragraph

Article in Microbial genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Review
  2. Article
  3. Microorganisms · 2026
    Review
  4. Article
  5. Article
  6. Article
  7. Molecular epidemiology ofAntimicrobial agents and chemotherapy · 2025
    Article
  8. Genomic epidemiology ofMicrobial genomics · 2025
    Article
  9. Article
  10. mBio · 2024
    Article
  11. Review
  12. Article
  13. Article
  14. Evaluation of Genomic Typing Methods in thePathogens (Basel, Switzerland) · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Investigation of an international outbreak of multidrug-resistant monophasicEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2022
    Article
  19. A Snapshot of the Genetic Diversity ofPathogens (Basel, Switzerland) · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Claudia E CoipanNational Institute for Public Health and the Environment (RIVM), Centre for Infectious Disease Control, Bilthoven, The Netherlands.
Timothy J DallmanNational Infections Service, Public Health England (PHE), London, England, UK.
Derek BrownScottish Microbiology Reference Laboratory (SMiRL), Glasgow, Scotland, UK.
Hassan HartmanNational Infections Service, Public Health England (PHE), London, England, UK.
Menno van der VoortWageningen Food Safety Research (WFSR), WB Wageningen, The Netherlands.
Redmar R van den BergNetherlands Food and Consumer Product Safety Authority (NVWA), Utrecht, The Netherlands.
Daniel PalmEuropean Centre for Disease Prevention and Control (ECDC), Solna Municipality, Sweden.
Saara KotilaEuropean Centre for Disease Prevention and Control (ECDC), Solna Municipality, Sweden.
Tom van WijkNational Institute for Public Health and the Environment (RIVM), Centre for Infectious Disease Control, Bilthoven, The Netherlands.
Eelco FranzNational Institute for Public Health and the Environment (RIVM), Centre for Infectious Disease Control, Bilthoven, The Netherlands.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A large European multi-country

Indexed as

Disease OutbreaksAllelesHumansPolymorphism, Single NucleotideSalmonella enteritidisSalmonella InfectionsWhole Genome SequencingWorkflowepidemiologyhierarchical clusteringinfectious diseasesurveillanceunsupervised machine learningwhole-genome sequencing

Identifiers

PMID32101514
PMCPMC7200063

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.