Evidence map›Paper›PMID 32098845›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2020

Designing heterotropically activated allosteric conformational switches using supercharging.

Peter J Schnatz, Joseph M Brisendine, Craig C Laing, Bernard H Everson, Cooper A French, Paul M Molinaro, Ronald L Koder

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. An expandable, modular de novo protein platform for precision redox engineering.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Tailorable Tetrahelical Bundles as a Toolkit for Redox Studies.The journal of physical chemistry. B · 2022
    Article
  7. Article
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Peter J SchnatzDepartment of Physics, The City College of New York, New York, NY 10031.
Joseph M BrisendineDepartment of Biochemistry, The City College of New York, New York, NY 10031.
Craig C LaingDepartment of Physics, The City College of New York, New York, NY 10031.
Bernard H EversonDepartment of Physics, The City College of New York, New York, NY 10031.
Cooper A FrenchDepartment of Biochemistry, The City College of New York, New York, NY 10031.
Paul M MolinaroDepartment of Physics, The City College of New York, New York, NY 10031.
Ronald L KoderDepartment of Physics, The City College of New York, New York, NY 10031; rkoder@ccny.cuny.edu.ORCID 0000-0003-0868-4972

Funding

Cellular/Molecular Basis of Development: Research CenterG12MD007603 · NIMHD · CITY COLLEGE OF NEW YORK · PI PEZZANO, MARK · 2012 to 2017
$11.5M
Structural and thermodynamic features which govern enzymatic nitric oxide detoxifR01GM111932 · NIGMS · CITY COLLEGE OF NEW YORK · PI KODER, RONALD · 2014 to 2017
$1.3M
NIGMS NIH HHS R01 GM111932NIMHD NIH HHS G12 MD007603
6 · The paper itself

Abstract

Heterotropic allosteric activation of protein function, in which binding of one ligand thermodynamically activates the binding of another, different ligand or substrate, is a fundamental control mechanism in metabolism and as such has been a long-aspired capability in protein design. Here we show that greatly increasing the magnitude of a protein's net charge using surface supercharging transforms that protein into an allosteric ligand- and counterion-gated conformational molecular switch. To demonstrate this we first modified the designed helical bundle hemoprotein H4, creating a highly charged protein which both unfolds reversibly at low ionic strength and undergoes the ligand-induced folding transition commonly observed in signal transduction by intrinsically disordered proteins in biology. As a result of the high surface-charge density, ligand binding to this protein is allosterically activated up to 1,300-fold by low concentrations of divalent cations and the polyamine spermine. To extend this process further using a natural protein, we similarly modified

Indexed as

Allosteric RegulationCalciumCations, DivalentCytochrome b GroupEscherichia coli ProteinsHemeproteinsIntrinsically Disordered ProteinsLigandsMagnesiumProtein ConformationProtein EngineeringProtein FoldingSpermineThermodynamicsCalciumCations, Divalentcytochrome b562, E coliCytochrome b GroupEscherichia coli ProteinsHemeproteinsIntrinsically Disordered ProteinsLigandsMagnesiumSpermineallosteryintrinsically disordered proteinsligand-induced foldingprotein designsupercharging

Identifiers

PMID32098845
PMCPMC7071918

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.