Evidence map›Paper›PMID 32098784›Full record

ArticleLife science alliance2020

Structures of SALSA/DMBT1 SRCR domains reveal the conserved ligand-binding mechanism of the ancient SRCR fold.

Martin P Reichhardt, Vuokko Loimaranta, Susan M Lea, Steven Johnson

Abstract read
In one paragraph

Article in Life science alliance, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. CD5L associates with IgM via the J chain.Nature communications · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. LOXL2 in Cancer: A Two-Decade Perspective.International journal of molecular sciences · 2023
    Review
  12. Article
  13. Review
  14. Article
  15. Structural and functional analysis of the C-terminal region of Streptococcus gordonii SspB.Acta crystallographica. Section D, Structural biology · 2021
    Article
  16. Article
  17. Article
  18. Review
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Martin P ReichhardtSir William Dunn School of Pathology, University of Oxford, Oxford, UK martinpreichhardt@gmail.com.ORCID 0000-0001-5345-5103
Vuokko LoimarantaInstitute of Dentistry, University of Turku, Turku, Finland.
Susan M LeaSir William Dunn School of Pathology, University of Oxford, Oxford, UK.ORCID 0000-0001-9287-8053
Steven JohnsonSir William Dunn School of Pathology, University of Oxford, Oxford, UK steven.johnson@path.ox.ac.uk.ORCID 0000-0002-7877-3543

Funding

Medical Research Council M011984Medical Research Council MR/M011984/1Wellcome Trust 100298Wellcome Trust 201536Wellcome Trust 209194/Z/17/Z
6 · The paper itself

Abstract

The scavenger receptor cysteine-rich (SRCR) family of proteins comprises more than 20 membrane-associated and secreted molecules. Characterised by the presence of one or more copies of the ∼110 amino-acid SRCR domain, this class of proteins have widespread functions as antimicrobial molecules, scavenger receptors, and signalling receptors. Despite the high level of structural conservation of SRCR domains, no unifying mechanism for ligand interaction has been described. The SRCR protein SALSA, also known as DMBT1/gp340, is a key player in mucosal immunology. Based on detailed structural data of SALSA SRCR domains 1 and 8, we here reveal a novel universal ligand-binding mechanism for SALSA ligands. The binding interface incorporates a dual cation-binding site, which is highly conserved across the SRCR superfamily. Along with the well-described cation dependency on most SRCR domain-ligand interactions, our data suggest that the binding mechanism described for the SALSA SRCR domains is applicable to all SRCR domains. We thus propose to have identified in SALSA a conserved functional mechanism for the SRCR class of proteins.

Indexed as

Amino Acid SequenceBinding SitesCalcium-Binding ProteinsCysteineDNA-Binding ProteinsHumansLigandsProtein BindingProtein DomainsReceptors, Cell SurfaceReceptors, ScavengerTumor Suppressor ProteinsCalcium-Binding ProteinsCysteineDMBT1 protein, humanDNA-Binding ProteinsLigandsReceptors, Cell SurfaceReceptors, ScavengerTumor Suppressor Proteins

Identifiers

PMID32098784
PMCPMC7043408

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.