Evidence map›Paper›PMID 32095981›Full record

ArticleMedical & biological engineering & computing2020

Toward an automatic tool for oligoclonal band detection in cerebrospinal fluid and tears for multiple sclerosis diagnosis: lane segmentation based on a ribbon univariate open active contour.

Farah Haddad, Samuel Boudet, Laurent Peyrodie, Nicolas Vandenbroucke, Patrick Hautecoeur, Gérard Forzy

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In one paragraph

Article in Medical & biological engineering & computing, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.1field-weighted citation impact, top 55% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 1 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Farah HaddadBiomedical Signal Processing Unit of Lille Catholic University (UTSB), Lille, France. farah.haddad@univ-catholille.fr.ORCID http://orcid.org/0000-0002-3292-9397
Samuel BoudetBiomedical Signal Processing Unit of Lille Catholic University (UTSB), Lille, France.
Laurent PeyrodieBiomedical Signal Processing Unit of Lille Catholic University (UTSB), Lille, France.
Nicolas VandenbrouckeLaboratoire d'Informatique Signal et Image de la Côte d'Opale (LISIC), Calais, France.
Patrick HautecoeurFaculty of Medicine and Midwifery (FMM), Lille, France.
Gérard ForzyFaculty of Medicine and Midwifery (FMM), Lille, France.
Université Catholique de Lille · FRGroupe Hospitalier de l'Institut Catholique de Lille · FRLaboratoire d’Informatique Signal et Image de la Côte d’Opale

Funding

Ligue Française contre la Sclérose en Plaques (FR) PhD grantThe French "Programme Hospitalier de Recherche Clinique" NCT02043964
6 · The paper itself

Abstract

The latest revision of multiple sclerosis diagnosis guidelines emphasizes the role of oligoclonal band detection in isoelectric focusing images of cerebrospinal fluid. Recent studies suggest tears as a promising noninvasive alternative to cerebrospinal fluid. We are developing the first automatic method for isoelectric focusing image analysis and oligoclonal band detection in cerebrospinal fluid and tear samples. The automatic analysis would provide an accurate, fast analysis and would reduce the expert-dependent variability and errors of the current visual analysis. In this paper, we describe a new effective model for the fully automated segmentation of highly distorted lanes in isoelectric focusing images. This approach is a new formulation of the classic parametric active contour problem, in which an open active contour is constrained to move from the top to the bottom of the image, and the x-axis coordinate is expressed as a function of the y-axis coordinate. The left and right edges of the lane evolved together in a ribbon-like shape so that the full width of the lane was captured reliably. The segmentation algorithm was implemented using a multiresolution approach in which the scale factor and the active contour control points were progressively increased. The lane segmentation algorithm was tested on a database of 51 isoelectric focusing images containing 419 analyzable lanes. The new model gave robust results for highly curved lanes, weak edges, and low-contrast lanes. A total of 98.8% of the lanes were perfectly segmented, and the remaining 1.2% had only minor errors. The computation time (1 s per membrane) is negligible. This method precisely defines the region of interest in each lane and thus is a major step toward the first fully automatic tool for oligoclonal band detection in isoelectric focusing images. Graphical abstract.

Indexed as

AlgorithmsElectrophoresisHumansImage Processing, Computer-AssistedMultiple SclerosisOligoclonal BandsTearsOligoclonal BandsAutomatic lane segmentationElectrophoresisMultiple sclerosisOpen active contours

Identifiers

PMID32095981
OpenAlexW3007735773

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.