ArticlePeerJ2020
Proteomic similarity of the Littorinid snails in the evolutionary context.
Article in PeerJ, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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10 citing papers in PubMed, 17 citations in OpenAlex.
- Non-Canonical Male Meiosis in a Marine Gastropod,Biology · 2025Article
- Forewarned is forearmed: rice plants develop tolerance to post-anoxia during anoxic conditions by proteomic changes.Frontiers in plant science · 2025Article
- First insights into the gut microbiomes and the diet of theEvolutionary applications · 2023Article
- Data on RNA-seq analysis of the oviducts of five closely related species genusData in brief · 2022Article
- Species-Specific Proteins in the Oviducts of Snail Sibling Species: Proteotranscriptomic Study ofBiology · 2021Article
- Linking ecology, morphology, and metabolism: Niche differentiation in sympatric populations of closely related species of the genusEcology and evolution · 2021Article
- Premating barriers in young sympatric snail species.Scientific reports · 2021Article
- The Distribution of Several Genomic Virulence Determinants Does Not Corroborate the Established Serotyping Classification ofInternational journal of molecular sciences · 2021Article
- Divergence together with microbes: A comparative study of the associated microbiomes in the closely related Littorina species.PloS one · 2021Article
- Genetic and morphological variation of metacercariae ofInternational journal for parasitology. Parasites and wildlife · 2020Article
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Authors and funding
7 authors at 1 institution in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundThe introduction of DNA-based molecular markers made a revolution in biological systematics. However, in cases of very recent divergence events, the neutral divergence may be too slow, and the analysis of adaptive part of the genome is more informative to reconstruct the recent evolutionary history of young species. The advantage of proteomics is its ability to reflect the biochemical machinery of life. It may help both to identify rapidly evolving genes and to interpret their functions.
methodsHere we applied a comparative gel-based proteomic analysis to several species from the gastropod family Littorinidae. Proteomes were clustered to assess differences related to species, geographic location, sex and body part, using data on presence/absence of proteins in samples and data on protein occurrence frequency in samples of different species. Cluster support was assessed using multiscale bootstrap resampling and the stability of clustering-using cluster-wise index of cluster stability. Taxon-specific protein markers were derived using IndVal method. Proteomic trees were compared to consensus phylogenetic tree (based on neutral genetic markers) using estimates of the Robinson-Foulds distance, the Fowlkes-Mallows index and cophenetic correlation.
resultsOverall, the DNA-based phylogenetic tree and the proteomic similarity tree had consistent topologies. Further, we observed some interesting deviations of the proteomic littorinid tree from the neutral expectations. (1) There were signs of molecular parallelism in two
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