Evidence map›Paper›PMID 32095098›Full record

ArticleJournal of ginseng research2020

Transcriptome analyses of the ginseng root rot pathogens

Taiying Li, Jin-Hyun Kim, Boknam Jung, Sungyeon Ji, Mun Won Seo, You Kyoung Han, Sung Woo Lee, Yeoung Seuk Bae, Hong-Gyu Choi, Seung-Ho Lee and 1 more

Open access · goldAbstract read
In one paragraph

Article in Journal of ginseng research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.5field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  8. Antagonistic effects ofFrontiers in microbiology · 2023
    Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Taiying LiDepartment of Applied Biology, Dong-A University, Busan, Republic of Korea.
Jin-Hyun KimDepartment of Molecular Genetics, Dong-A University, Busan, Republic of Korea.
Boknam JungDepartment of Applied Biology, Dong-A University, Busan, Republic of Korea.
Sungyeon JiDepartment of Applied Biology, Dong-A University, Busan, Republic of Korea.
Mun Won SeoGinseng Research Division, Natural Institute of Horticultural and Herbal Science, Eumseong, Republic of Korea.
You Kyoung HanGinseng Research Division, Natural Institute of Horticultural and Herbal Science, Eumseong, Republic of Korea.
Sung Woo LeeGinseng Research Division, Natural Institute of Horticultural and Herbal Science, Eumseong, Republic of Korea.
Yeoung Seuk BaeGinseng Research Division, Natural Institute of Horticultural and Herbal Science, Eumseong, Republic of Korea.
Hong-Gyu ChoiDepartment of Molecular Genetics, Dong-A University, Busan, Republic of Korea.
Seung-Ho LeeGinseng Research Division, Natural Institute of Horticultural and Herbal Science, Eumseong, Republic of Korea.
Jungkwan LeeDepartment of Applied Biology, Dong-A University, Busan, Republic of Korea.
Dong-A University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe ascomycete fungi

methodsTranscriptome analyses of Fs and Cd mycelia treated with or without radicicol were conducted using RNA-seq. All of the differentially expressed genes (DEGs) were functionally annotated using the

resultsTreatment with radicicol resulted in upregulation of chitin synthase and cell wall integrity genes in Fs and upregulation of nicotinamide adenine dinucleotide dehydrogenase and sugar transporter genes in Cd. Genes encoding an ATP-binding cassette transporter, an aflatoxin efflux pump, ammonium permease 1 (

conclusionThe transcriptome analyses suggested radicicol resistance pathways, and deletions of the transporter genes indicated that they contribute to radicicol resistance.

Indexed as

Cylindrocarpon destructansFusarium solaniGinseng root rotRadicicolTranscriptomes

Identifiers

PMID32095098
PMCPMC7033362
OpenAlexW2901877119

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.