Evidence map›Paper›PMID 32094334›Full record

ArticleCell death & disease2020

EMT transcription factor ZEB1 alters the epigenetic landscape of colorectal cancer cells.

Pablo Lindner, Sushmita Paul, Markus Eckstein, Chuanpit Hampel, Julienne K Muenzner, Katharina Erlenbach-Wuensch, Husayn P Ahmed, Vijayalakshmi Mahadevan, Thomas Brabletz, Arndt Hartmann and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 59 papers.

0numbers the graph read from it
0cells of the map it votes in
59citing papers in PubMed
11.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

59 citing papers in PubMed, 97 citations in OpenAlex.

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  16. The Impact and Mechanism of Action of Peptostreptococcus anaerobius on Chemotherapy Resistance in Human Colorectal Cancer.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 2 countries.

Pablo LindnerInstitute of Pathology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Sushmita PaulLaboratory of Systems Tumor Immunology, Department of Dermatology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Markus EcksteinInstitute of Pathology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Chuanpit HampelInstitute of Pathology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Julienne K MuenznerInstitute of Pathology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Katharina Erlenbach-WuenschInstitute of Pathology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Husayn P AhmedInstitute of Bioinformatics and Applied Biotechnology (IBAB), Bangalore, India.ORCID http://orcid.org/0000-0003-4472-2067
Vijayalakshmi MahadevanInstitute of Bioinformatics and Applied Biotechnology (IBAB), Bangalore, India.
Thomas BrabletzExperimental Medicine I, Nikolaus-Fiebiger-Center for Molecular Medicine, Comprehensice Cancer Center, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Erlangen, Germany.
Arndt HartmannInstitute of Pathology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Julio VeraLaboratory of Systems Tumor Immunology, Department of Dermatology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany.
Regine Schneider-StockInstitute of Pathology, Universitätsklinikum Erlangen, Friedrich-Alexander University of Erlangen-Nuremberg, Bavaria, Germany. regine.schneider-stock@uk-erlangen.de.
Friedrich-Alexander-Universität Erlangen-Nürnberg · DEInstitute of Bioinformatics and Applied Biotechnology · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic deregulation remarkably triggers mechanisms associated with tumor aggressiveness like epithelial-mesenchymal transition (EMT). Since EMT is a highly complex, but also reversible event, epigenetic processes such as DNA methylation or chromatin alterations must be involved in its regulation. It was recently described that loss of the cell cycle regulator p21 was associated with a gain in EMT characteristics and an upregulation of the master EMT transcription factor ZEB1. In this study, in silico analysis was performed in combination with different in vitro and in vivo techniques to identify and verify novel epigenetic targets of ZEB1, and to proof the direct transcriptional regulation of SETD1B by ZEB1. The chorioallantoic-membrane assay served as an in vivo model to analyze the ZEB1/SETD1B interaction. Bioinformatical analysis of CRC patient data was used to examine the ZEB1/SETD1B network under clinical conditions and the ZEB1/SETD1B network was modeled under physiological and pathological conditions. Thus, we identified a self-reinforcing loop for ZEB1 expression and found that the SETD1B associated active chromatin mark H3K4me3 was enriched at the ZEB1 promoter in EMT cells. Moreover, clinical evaluation of CRC patient data showed that the simultaneous high expression of ZEB1 and SETD1B was correlated with the worst prognosis. Here we report that the expression of chromatin modifiers is remarkably dysregulated in EMT cells. SETD1B was identified as a new ZEB1 target in vitro and in vivo. Our study demonstrates a novel example of an activator role of ZEB1 for the epigenetic landscape in colorectal tumor cells.

Indexed as

Epithelial-Mesenchymal TransitionCell MovementCell ProliferationColorectal NeoplasmsEpigenesis, GeneticGene Expression Regulation, NeoplasticHumansUp-RegulationZinc Finger E-box-Binding Homeobox 1ZEB1 protein, humanZinc Finger E-box-Binding Homeobox 1

Identifiers

PMID32094334
PMCPMC7040187
OpenAlexW3006802492

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.