Evidence map›Paper›PMID 32094331›Full record

ArticleNature communications2020

The structural basis of fungal glucuronoyl esterase activity on natural substrates.

Heidi A Ernst, Caroline Mosbech, Annette E Langkilde, Peter Westh, Anne S Meyer, Jane W Agger, Sine Larsen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Heidi A ErnstDepartment of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, Copenhagen Ø, Denmark.ORCID http://orcid.org/0000-0001-5458-2454
Caroline MosbechDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kongens Lyngby, Denmark.ORCID http://orcid.org/0000-0001-9919-1705
Annette E LangkildeDepartment of Drug Design and Pharmacology, University of Copenhagen, Universitetsparken 2, 2100, Copenhagen Ø, Denmark.ORCID http://orcid.org/0000-0003-2467-4205
Peter WesthDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kongens Lyngby, Denmark.ORCID http://orcid.org/0000-0002-6185-0637
Anne S MeyerDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kongens Lyngby, Denmark.ORCID http://orcid.org/0000-0001-8910-9931
Jane W AggerDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Søltofts Plads 221, 2800, Kongens Lyngby, Denmark. jaag@dtu.dk.
Sine LarsenDepartment of Chemistry, University of Copenhagen, Universitetsparken 5, 2100, Copenhagen Ø, Denmark. sine@chem.ku.dk.ORCID http://orcid.org/0000-0003-3848-1789
Technical University of Denmark · DKUniversity of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Structural and functional studies were conducted of the glucuronoyl esterase (GE) from Cerrena unicolor (CuGE), an enzyme catalyzing cleavage of lignin-carbohydrate ester bonds. CuGE is an α/β-hydrolase belonging to carbohydrate esterase family 15 (CE15). The enzyme is modular, comprised of a catalytic and a carbohydrate-binding domain. SAXS data show CuGE as an elongated rigid molecule where the two domains are connected by a rigid linker. Detailed structural information of the catalytic domain in its apo- and inactivated form and complexes with aldouronic acids reveal well-defined binding of the 4-O-methyl-a-D-glucuronoyl moiety, not influenced by the nature of the attached xylo-oligosaccharide. Structural and sequence comparisons within CE15 enzymes reveal two distinct structural subgroups. CuGE belongs to the group of fungal CE15-B enzymes with an open and flat substrate-binding site. The interactions between CuGE and its natural substrates are explained and rationalized by the structural results, microscale thermophoresis and isothermal calorimetry.

Indexed as

Catalytic DomainCarbohydratesCell WallCrystallography, X-RayEsterasesFungal ProteinsGlucuronic AcidHydrolysisLigninPolyporalesProtein Structure, SecondaryRecombinant ProteinsScattering, Small AngleStructure-Activity RelationshipSubstrate SpecificityX-Ray DiffractionCarbohydratesEsterasesFungal ProteinsGlucuronic AcidLigninlignocelluloseRecombinant Proteins

Identifiers

PMID32094331
PMCPMC7039992
OpenAlexW3008289593

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.