Evidence map›Paper›PMID 32093770›Full record

ArticleBMC research notes2020

Crohn's disease: failure of a proprietary fluorescent in situ hybridization assay to detect M. avium subspecies paratuberculosis in archived frozen intestine from patients with Crohn's disease.

Robert J Greenstein, Liya Su, Peter S Fam, Brooke Gurland, Paul Endres, Sheldon T Brown

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Robert J GreensteinDepartment of Surgery, James J. Peters Veterans Affairs Medical Center Bronx, New York, USA. BGAxis@aol.com.ORCID http://orcid.org/0000-0002-1224-2192
Liya SuLaboratory of Molecular Surgical Research, James J. Peters Veterans Affairs Medical Center Bronx, New York, USA.
Peter S FamMental Illness Research Education and Clinical Center (MIRECC), James J. Peters, Veterans Affairs Medical Center Bronx, New York, USA.
Brooke GurlandColorectal Surgery, Stanford University School of Medicine, Stanford CA, USA.
Paul EndresDepartment of Pathology, Icahn School of Medicine at Mount Sinai New York, New York, USA.
Sheldon T BrownInfectious Disease Section, James J. Peters Veterans Affairs Medical Center Bronx, New York, USA.
James J. Peters VA Medical Center · USIcahn School of Medicine at Mount Sinai · USStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesAlthough controversial, there is increasing concern that Crohn's disease may be a zoonotic infectious disease consequent to a mycobacterial infection. The most plausible candidate is M. avium subspecies paratuberculosis (MAP) that is unequivocally responsible for Johne's disease in ruminants. The purpose of this study was to evaluate a proprietary (Affymetrix™ RNA view

resultsRepetitively, false positive signal was observed in our "No-Probe" negative control. Attempts were made to correct this according to the manufacturer's suggestions (by modifying wash solutions, using recommended hydrochloric acid titration and different fluorescent filters). None prevented false positive signal in the "No-Probe" control. It is concluded that when performed according to manufactures instruction and with multiple variations on the manufactures recommended suggestions to correct for false positive signal, that the Affymetrix™ RNA view

Indexed as

AnimalsCrohn DiseaseDiagnostic Tests, RoutineDNA, BacterialFrozen SectionsHumansIn Situ Hybridization, FluorescenceIntestinesMycobacterium avium subsp. paratuberculosisParatuberculosisRuminantsSensitivity and SpecificityDNA, BacterialCrohn diseaseIn situ hybridizationJohne diseaseMycobacteriaMycobacterium avium subspecies paratuberculosis

Identifiers

PMID32093770
PMCPMC7038517
OpenAlexW3012240859

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.