Evidence map›Paper›PMID 32092784›Full record

ArticleEuropean journal of immunology2020

YY1 control of mitochondrial-related genes does not account for regulation of immunoglobulin class switch recombination in mice.

Satabdi Nandi, Guanxiang Liang, Vishal Sindhava, Rajesh Angireddy, Arindam Basu, Sarmistha Banerjee, Suchita Hodawadekar, Yue Zhang, Narayan G Avadhani, Ranjan Sen and 1 more

Open access · greenAbstract read
In one paragraph

Article in European journal of immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Satabdi NandiSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Guanxiang LiangSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Vishal SindhavaSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Rajesh AngireddySchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Arindam BasuSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Sarmistha BanerjeeSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Suchita HodawadekarSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Yue ZhangSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Narayan G AvadhaniSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.
Ranjan SenLaboratory of Molecular Biology and Immunology, National Institute on Aging, Baltimore, MD, USA.
Michael L AtchisonSchool of Veterinary Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-5496-1486
University of Pennsylvania · USHealth First · USNational Institute on Aging · US

Funding

Role of Mitochondria-Targeted CYP2D6 in Chemical ToxicityR01GM034883 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI AVADHANI, NARAYAN G · 1985 to 2018
$6.1M
Control of B cell Development by YY1R01AI079002 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2010 to 2020
$4.3M
The role of YY1 in constitutive and inducible DNA loop formationR01GM111384 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ATCHISON, MICHAEL LEE · 2014 to 2017
$1.2M
Intramural NIH HHS Z99 AG999999NIAID NIH HHS R01 AI079002NIGMS NIH HHS R01 GM034883NIGMS NIH HHS R01 GM111384NIH HHS R01 GM34883
6 · The paper itself

Abstract

Immunoglobulin class switch recombination (CSR) occurs in activated B cells with increased mitochondrial mass and membrane potential. Transcription factor Yin Yang 1 (YY1) is critical for CSR and for formation of the DNA loops involved in this process. We therefore sought to determine if YY1 knockout impacts mitochondrial gene expression and mitochondrial function in murine splenic B cells, providing a potential mechanism for regulating CSR. We identified numerous genes in splenic B cells differentially regulated when cells are induced to undergo CSR. YY1 conditional knockout caused differential expression of 1129 genes, with 59 being mitochondrial-related genes. ChIP-seq analyses showed YY1 was directly bound to nearly half of these mitochondrial-related genes. Surprisingly, at the time when YY1 knockout dramatically reduces DNA loop formation and CSR, mitochondrial mass and membrane potential were not significantly impacted, nor was there a significant change in mitochondrial oxygen consumption, extracellular acidification rate, or mitochondrial complex I or IV activities. Our results indicate that YY1 regulates numerous mitochondrial-related genes in splenic B cells, but this does not account for the impact of YY1 on CSR or long-distance DNA loop formation.

Indexed as

Immunoglobulin Class SwitchingAnimalsB-LymphocytesDNA, MitochondrialGenes, MitochondrialMiceMice, KnockoutSpleenYY1 Transcription FactorDNA, MitochondrialYy1 protein, mouseYY1 Transcription FactorClass switch recombinationImmunoglobulinMitochondriaTranscriptionYY1

Identifiers

PMID32092784
PMCPMC8287517
OpenAlexW3008477429

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.