Evidence map›Paper›PMID 32092083›Full record

ArticlePloS one2020

FMN-dependent oligomerization of putative lactate oxidase from Pediococcus acidilactici.

Yashwanth Ashok, Mirko M Maksimainen, Tuija Kallio, Pekka Kilpeläinen, Lari Lehtiö

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yashwanth AshokFaculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland.
Mirko M MaksimainenFaculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland.
Tuija KallioUnit of Measurement Technology, Kajaani University Consortium, University of Oulu, Kajaani, Finland.
Pekka KilpeläinenUnit of Measurement Technology, Kajaani University Consortium, University of Oulu, Kajaani, Finland.
Lari LehtiöFaculty of Biochemistry and Molecular Medicine, University of Oulu, Oulu, Finland.ORCID 0000-0001-7250-832X
University of Oulu · FIKajaani University of Applied Sciences · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lactate oxidases belong to a group of FMN-dependent enzymes and they catalyze a conversion of lactate to pyruvate with a release of hydrogen peroxide. Hydrogen peroxide is also utilized as a read out in biosensors to quantitate lactate levels in biological samples. Aerococcus viridans lactate oxidase is the best characterized lactate oxidase and our knowledge of lactate oxidases relies largely to studies conducted with that particular enzyme. Pediococcus acidilactici lactate oxidase is also commercially available for e.g. lactate measurements, but this enzyme has not been characterized in detail before. Here we report structural characterization of the recombinant enzyme and its co-factor dependent oligomerization. The crystal structures revealed two distinct conformations in the loop closing the active site, consistent with previous biochemical studies implicating the role of loop in catalysis. Despite the structural conservation of active site residues, we were not able to detect either oxidase or monooxygenase activity when L-lactate was used as a substrate. Pediococcus acidilactici lactate oxidase is therefore an example of a misannotation of an FMN-dependent enzyme, which catalyzes likely a so far unknown oxidation reaction.

Indexed as

CatalysisCatalytic DomainCrystallography, X-RayFlavin MononucleotideLactic AcidMixed Function OxygenasesPediococcus acidilacticiProtein MultimerizationRecombinant ProteinsFlavin Mononucleotidelactate 2-monooxygenaseLactic AcidMixed Function OxygenasesRecombinant Proteins

Identifiers

PMID32092083
PMCPMC7039449
OpenAlexW3006186511

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.