Evidence map›Paper›PMID 32092066›Full record

ArticlePloS one2020

Identification of quantitative trait loci associated with nitrogen use efficiency in winter wheat.

Kyle Brasier, Brian Ward, Jared Smith, John Seago, Joseph Oakes, Maria Balota, Paul Davis, Myron Fountain, Gina Brown-Guedira, Clay Sneller and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Review
  3. Comparison of single-trait and multi-trait genomic predictions on agronomic and disease resistance traits in spring wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  4. Do lower nitrogen fertilization levels require breeding of different types of cultivars in triticale?TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  5. Genome-based prediction of agronomic traits in spring wheat under conventional and organic management systems.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
    Article
  6. Article
  7. Review
  8. Article
  9. Meta-QTLs, ortho-MQTLs and candidate genes for nitrogen use efficiency and root system architecture in bread wheat (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Kyle BrasierSchool of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.ORCID 0000-0002-9944-0983
Brian WardEastern Regional Small Grains Genotyping Laboratory, USDA-ARS, Raleigh, North Carolina, United States of America.ORCID 0000-0002-4129-7934
Jared SmithEastern Regional Small Grains Genotyping Laboratory, USDA-ARS, Raleigh, North Carolina, United States of America.
John SeagoSchool of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.
Joseph OakesEastern Virginia Agricultural Research and Extension Center, Warsaw, Virginia, United States of America.
Maria BalotaSchool of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.
Paul DavisExtension, Virginia Tech, New Kent, Virginia, United States of America.
Myron FountainAgricultural Research, USDA-ARS, Raleigh, North Carolina, United States of America.
Gina Brown-GuediraEastern Regional Small Grains Genotyping Laboratory, USDA-ARS, Raleigh, North Carolina, United States of America.
Clay SnellerDepartment of Crops and Horticulture, Ohio State University, Wooster, Ohio, United States of America.
Wade ThomasonSchool of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.
Carl GriffeySchool of Plant and Environmental Sciences, Virginia Tech, Blacksburg, Virginia, United States of America.
Virginia Tech · USAgricultural Research Service · USVirginia Cooperative Extension · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Maintaining winter wheat (Triticum aestivum L.) productivity with more efficient nitrogen (N) management will enable growers to increase profitability and reduce the negative environmental impacts associated with nitrogen loss. Wheat breeders would therefore benefit greatly from the identification and application of genetic markers associated with nitrogen use efficiency (NUE). To investigate the genetics underlying N response, two bi-parental mapping populations were developed and grown in four site-seasons under low and high N rates. The populations were derived from a cross between previously identified high NUE parents (VA05W-151 and VA09W-52) and a shared common low NUE parent, 'Yorktown.' The Yorktown × VA05W-151 population was comprised of 136 recombinant inbred lines while the Yorktown × VA09W-52 population was comprised of 138 doubled haploids. Phenotypic data was collected on parental lines and their progeny for 11 N-related traits and genotypes were sequenced using a genotyping-by-sequencing platform to detect more than 3,100 high quality single nucleotide polymorphisms in each population. A total of 130 quantitative trait loci (QTL) were detected on 20 chromosomes, six of which were associated with NUE and N-related traits in multiple testing environments. Two of the six QTL for NUE were associated with known photoperiod (Ppd-D1 on chromosome 2D) and disease resistance (FHB-4A) genes, two were reported in previous investigations, and one QTL, QNue.151-1D, was novel. The NUE QTL on 1D, 6A, 7A, and 7D had LOD scores ranging from 2.63 to 8.33 and explained up to 18.1% of the phenotypic variation. The QTL identified in this study have potential for marker-assisted breeding for NUE traits in soft red winter wheat.

Indexed as

GenotypeHybridization, GeneticNitrogenPhenotypeQuantitative Trait LociSeasonsTriticumNitrogen

Identifiers

PMID32092066
PMCPMC7039505
OpenAlexW3008408867

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.