Evidence map›Paper›PMID 32091413›Full record

Trial reportThe Journal of clinical investigation2020

Circulating tumor DNA profile recognizes transformation to castration-resistant neuroendocrine prostate cancer.

Himisha Beltran, Alessandro Romanel, Vincenza Conteduca, Nicola Casiraghi, Michael Sigouros, Gian Marco Franceschini, Francesco Orlando, Tarcisio Fedrizzi, Sheng-Yu Ku, Emma Dann and 9 more

Registry-linked trialOpen access · bronzeAbstract readClinical Trial
In one paragraph

Trial report in The Journal of clinical investigation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06981377 (Development of the PRIME Test for the Identification of Prostate Cancer Patients' Biomarkers Through Non-invasive Liquid Biopsies), which is not on this map. Cited by 126 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
126citing papers in PubMed, 2 pooled it
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06981377 recruitingnot on this map

Development of the PRIME Test for the Identification of Prostate Cancer Patients' Biomarkers Through Non-invasive Liquid Biopsies

TypeobservationalSponsorSanta Chiara HospitalRan2019 to 2027Enrolled800ConditionsMetastatic Prostate CancerArmsAnalysis of cell free DNA, and extracellular vesicles (EVs) and EV-associated molecular components (including RNA, DNA, proteins)
3 · Its place in the literature

Who cites it

126 citing papers in PubMed, 2 syntheses or guidelines pooled it, 190 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
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  5. Phase II Multicenter Study of Enzalutamide in Metastatic Castration-Resistant Prostate Cancer to Identify Mechanisms Driving Resistance.Clinical cancer research : an official journal of the American Association for Cancer Research · 2021
    Trial
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  7. Review
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  10. Variable cellular and radiobiological effects of [Journal of experimental & clinical cancer research : CR · 2026
    Article
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66 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 4 institutions in 3 countries.

Himisha BeltranDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, Massachusetts, USA.
Alessandro RomanelDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Vincenza ConteducaDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, Massachusetts, USA.
Nicola CasiraghiDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Michael SigourosDepartment of Medicine, Division of Medical Oncology, Weill Cornell Medicine, New York, New York, USA.
Gian Marco FranceschiniDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Francesco OrlandoDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Tarcisio FedrizziDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Sheng-Yu KuDepartment of Medical Oncology, Dana Farber Cancer Institute, Boston, Massachusetts, USA.
Emma DannDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Alicia AlonsoCaryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital, Weill Cornell Medicine, New York, New York, USA.
Juan Miguel MosqueraCaryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital, Weill Cornell Medicine, New York, New York, USA.
Andrea SbonerCaryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital, Weill Cornell Medicine, New York, New York, USA.
Jenny XiangCaryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital, Weill Cornell Medicine, New York, New York, USA.
Olivier ElementoCaryl and Israel Englander Institute for Precision Medicine, New York Presbyterian Hospital, Weill Cornell Medicine, New York, New York, USA.
David M NanusDepartment of Medicine, Division of Medical Oncology, Weill Cornell Medicine, New York, New York, USA.
Scott T TagawaDepartment of Medicine, Division of Medical Oncology, Weill Cornell Medicine, New York, New York, USA.
Matteo BenelliDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Francesca DemichelisDepartment of Cellular, Computational and Integrative Biology (CIBIO), University of Trento, Trento, Italy.
Cornell University · USUniversity of Trento · ITDana-Farber Cancer Institute · USIstituto Scientifico Romagnolo per lo Studio e la Cura dei Tumori · IT

Funding

Disparities in COVID Disease Severity and Outcomes in New York CityUL1TR002384 · NCATS · WEILL MEDICAL COLL OF CORNELL UNIV · PI JULIANNE L IMPERATO-MCGINLEY · 2017 to 2026
$86.2M
Weill Cornell Medicine (WCM) SPORE in Prostate CancerP50CA211024 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI LODA, MASSIMO · 2017 to 2021
$10.9M
Towards Understanding Prostate Cancer HeterogeneityR01CA125612 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI RUBIN, MARK A. · 2007 to 2017
$3.4M
NCATS NIH HHS UL1 TR002384NCI NIH HHS P50 CA211024NCI NIH HHS R01 CA125612
6 · The paper itself

Abstract

Loss of androgen receptor (AR) signaling dependence occurs in approximately 15%-20% of advanced treatment-resistant prostate cancers, and this may manifest clinically as transformation from a prostate adenocarcinoma histology to a castration-resistant neuroendocrine prostate cancer (CRPC-NE). The diagnosis of CRPC-NE currently relies on a metastatic tumor biopsy, which is invasive for patients and sometimes challenging to diagnose due to morphologic heterogeneity. By studying whole-exome sequencing and whole-genome bisulfite sequencing of cell free DNA (cfDNA) and of matched metastatic tumor biopsies from patients with metastatic prostate adenocarcinoma and CRPC-NE, we identified CRPC-NE features detectable in the circulation. Overall, there was markedly higher concordance between cfDNA and biopsy tissue genomic alterations in patients with CRPC-NE compared with castration-resistant adenocarcinoma, supporting greater intraindividual genomic consistency across metastases. Allele-specific copy number and serial sampling analyses allowed for the detection and tracking of clonal and subclonal tumor cell populations. cfDNA methylation was indicative of circulating tumor content fraction, reflective of methylation patterns observed in biopsy tissues, and was capable of detecting CRPC-NE-associated epigenetic changes (e.g., hypermethylation of ASXL3 and SPDEF; hypomethylation of INSM1 and CDH2). A targeted set combining genomic (TP53, RB1, CYLD, AR) and epigenomic (hypo- and hypermethylation of 20 differential sites) alterations applied to ctDNA was capable of identifying patients with CRPC-NE.

Indexed as

AdenocarcinomaCarcinoma, NeuroendocrineCirculating Tumor DNADNA MethylationEpigenesis, GeneticGene Expression Regulation, NeoplasticNeoplasm ProteinsProstatic Neoplasms, Castration-ResistantGene Expression ProfilingHumansMaleProspective StudiesCirculating Tumor DNANeoplasm ProteinsOncologyProstate cancer

Identifiers

PMID32091413
PMCPMC7108892
OpenAlexW3008365787

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.