Evidence map›Paper›PMID 32091364›Full record

ArticleEmerging infectious diseases2020

Whole-Genome Sequencing to Detect Numerous Campylobacter jejuni Outbreaks and Match Patient Isolates to Sources, Denmark, 2015-2017.

Katrine G Joensen, Kristoffer Kiil, Mette R Gantzhorn, Birgitte Nauerby, Jørgen Engberg, Hanne M Holt, Hans L Nielsen, Andreas M Petersen, Katrin G Kuhn, Gudrun Sandø and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Emerging infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  9. Imported spring onions related to the first recorded outbreak of enteroinvasiveEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2023
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  10. Genomic insight intoFrontiers in veterinary science · 2023
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  16. Whole genome sequencing data used for surveillance ofEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin · 2021
    Article
  17. Whole Resistome Analysis inFrontiers in microbiology · 2021
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  18. Identification of Transmission Routes ofPathogens (Basel, Switzerland) · 2020
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  19. Host-Dependent Clustering ofFrontiers in microbiology · 2020
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  20. Genomic and Phenotypic Characterisation ofFrontiers in cellular and infection microbiology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 3 countries.

Katrine G Joensen
Kristoffer Kiil
Mette R Gantzhorn
Birgitte Nauerby
Jørgen Engberg
Hanne M Holt
Hans L Nielsen
Andreas M Petersen
Katrin G Kuhn
Gudrun Sandø
Steen Ethelberg
Eva M Nielsen
Statens Serum Institut · DKDanish Agriculture and Food Council · DKWellington Hospital · NZAalborg University · DKInstitute of Clinical Research · USOdense University Hospital · DKUniversity of Southern Denmark · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In industrialized countries, the leading cause of bacterial gastroenteritis is Campylobacter jejuni. However, outbreaks are rarely reported, which may reflect limitations of surveillance, for which molecular typing is not routinely performed. To determine the frequency of genetic clusters among patients and to find links to concurrent isolates from poultry meat, broiler chickens, cattle, pigs, and dogs, we performed whole-genome sequencing on 1,509 C. jejuni isolates from 774 patients and 735 food or animal sources in Denmark during 2015-2017. We found numerous clusters; 366/774 (47.3%) clinical isolates formed 104 clusters of >2 isolates. A total of 41 patient clusters representing 199/366 (54%) patients matched a potential source, primarily domestic chickens/broilers. This study revealed serial outbreaks and numerous matches to concurrent food and animal isolates and highlighted the potential of whole-genome sequencing for improving routine surveillance of C. jejuni by enhancing outbreak detection, source tracing, and potentially prevention of human infections.

Indexed as

Disease OutbreaksAnimalsCampylobacter InfectionsCampylobacter jejuniCattleChickensDenmarkDogsFemaleFoodborne DiseasesGastroenteritisHumansMaleWhole Genome SequencingbacteriaCampylobactercgMLSTcore-genome multilocus sequence typingDenmarkepidemiologyfoodborne infectionsmolecular subtypingoutbreakswhole-genome sequencing

Identifiers

PMID32091364
PMCPMC7045838
OpenAlexW3004779125

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.