Evidence map›Paper›PMID 32090355›Full record

ArticleThe EMBO journal2020

The SiaA/B/C/D signaling network regulates biofilm formation in Pseudomonas aeruginosa.

Gukui Chen, Jianhua Gan, Chun Yang, Yili Zuo, Juan Peng, Meng Li, Weiping Huo, Yingpeng Xie, Yani Zhang, Tietao Wang and 2 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 49 citations in OpenAlex.

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  8. The surface interface and swimming motility influence surface-sensing responses inProceedings of the National Academy of Sciences of the United States of America · 2024
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  9. Diversification ofMicroorganisms · 2024
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  17. Genome characterization of a uropathogenicFrontiers in cellular and infection microbiology · 2022
    Article
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  20. Transcriptome Analysis ofAdvances and applications in bioinformatics and chemistry : AABC · 2021
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Gukui Chen *Key Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.ORCID 0000-0002-0838-5967
Jianhua Gan *State Key Laboratory of Genetic Engineering, Shanghai Public Health Clinical Center, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China.ORCID 0000-0002-8438-8852
Chun YangState Key Laboratory of Genetic Engineering, Shanghai Public Health Clinical Center, Collaborative Innovation Center of Genetics and Development, School of Life Sciences, Fudan University, Shanghai, China.
Yili ZuoKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.
Juan PengKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.
Meng LiKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.ORCID 0000-0002-2430-9665
Weiping HuoKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.
Yingpeng XieDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.
Yani ZhangKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.
Tietao WangKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.ORCID 0000-0001-8540-436X
Xin DengDepartment of Biomedical Sciences, City University of Hong Kong, Hong Kong, China.
Haihua LiangKey Laboratory of Resources Biology and Biotechnology in Western China, Ministry of Education, College of Life Sciences, Northwest University, Xi'an, Shaanxi, China.ORCID 0000-0001-9639-1867
Ministry of Education of the People's Republic of China · CNCity University of Hong Kong · HKShanghai Public Health Clinical Center · CN

Funding

National Natural Science Foundation of China 31622003National Natural Science Foundation of China 31670080National Natural Science Foundation of China 31700064National Natural Science Foundation of China 31870060Natural Science Basic Research Program of Shaanxi 2019JQ-134The Program for Changjiang Scholars and Innovative Research Team in University IRT1174The Program for Changjiang Scholars and Innovative Research Team in University ITR_15R55
6 · The paper itself

Abstract

Bacterial cyclic-di-GMP (c-di-GMP) production is associated with biofilm development and the switch from acute to chronic infections. In Pseudomonas aeruginosa, the diguanylate cyclase (DGC) SiaD and phosphatase SiaA, which are co-transcribed as part of a siaABCD operon, are essential for cellular aggregation. However, the detailed functions of this operon and the relationships among its constituent genes are unknown. Here, we demonstrate that the siaABCD operon encodes for a signaling network that regulates SiaD enzymatic activity to control biofilm and aggregates formation. Through protein-protein interaction, SiaC promotes SiaD diguanylate cyclase activity. Biochemical and structural data revealed that SiaB is an unusual protein kinase that phosphorylates SiaC, whereas SiaA phosphatase can dephosphorylate SiaC. The phosphorylation state of SiaC is critical for its interaction with SiaD, which will switch on or off the DGC activity of SiaD and regulate c-di-GMP levels and subsequent virulence phenotypes. Collectively, our data provide insights into the molecular mechanisms underlying the modulation of DGC activity associated with chronic infections, which may facilitate the development of antimicrobial drugs.

Indexed as

Signal TransductionBacterial ProteinsBiofilmsCyclic GMPEscherichia coli ProteinsGene Expression Regulation, BacterialPhenotypePhosphorus-Oxygen LyasesPseudomonas aeruginosaVirulenceBacterial Proteinsbis(3',5')-cyclic diguanylic acidCyclic GMPdiguanylate cyclaseEscherichia coli ProteinsPhosphorus-Oxygen Lyasesbiofilm formationcrystal structurephosphorylationprotein-protein interactionPseudomonas aeruginosa

Identifiers

PMID32090355
PMCPMC7073463
OpenAlexW3008591221

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.