ArticleBioscience reports2020
Whole genome survey analysis and microsatellite motif identification of Sebastiscus marmoratus.
Article in Bioscience reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Comprehensive Whole-Genome Survey and Analysis of the Naozhou Stock of Large Yellow Croakers (Animals : an open access journal from MDPI · 2025Article
- Whole-Genome Survey Analyses of Five Goby Species Provide Insights into Their Genetic Evolution and Invasion-Related Genes.International journal of molecular sciences · 2024Article
- A first insight into the genomic background of Ilex pubescens (Aquifoliaceae) by flow cytometry and genome survey sequencing.BMC genomics · 2023Article
- Whole-Genome Survey and Microsatellite Marker Detection of Antarctic Crocodile Icefish,Animals : an open access journal from MDPI · 2022Article
- Genomic Survey and Microsatellite Marker Investigation of Patagonian Moray Cod (Animals : an open access journal from MDPI · 2022Article
- Article
- Comprehensive Draft Genome Analyses of Three Rockfishes (Scorpaeniformes,Current issues in molecular biology · 2021Article
- Genome-Wide Survey Reveals the Microsatellite Characteristics and Phylogenetic Relationships ofCurrent issues in molecular biology · 2021Article
- Genome survey and microsatellite motif identification of Pogonophryne albipinna.Bioscience reports · 2021Article
- Whole genome survey and microsatellite motif identification of Artemia franciscana.Bioscience reports · 2021Article
- Genomic characteristics and profile of microsatellite primers for Acanthogobius ommaturus by genome survey sequencing.Bioscience reports · 2020Article
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4 authors.
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Abstract
The marbled rockfish Sebastiscus marmoratus is an ecologically and economically important marine fish species distributed along the northwestern Pacific coast from Japan to the Philippines. Here, next-generation sequencing was used to generate a whole genome survey dataset to provide fundamental information of its genome and develop genome-wide microsatellite markers for S. marmoratus. The genome size of S. marmoratus was estimated as approximate 800 Mb by using K-mer analyses, and its heterozygosity ratio and repeat sequence ratio were 0.17% and 39.65%, respectively. The preliminary assembled genome was nearly 609 Mb with GC content of 41.3%, and the data were used to develop microsatellite markers. A total of 191,592 microsatellite motifs were identified. The most frequent repeat motif was dinucleotide with a frequency of 76.10%, followed by 19.63% trinucleotide, 3.91% tetranucleotide, and 0.36% pentanucleotide motifs. The AC, GAG, and ATAG repeats were the most abundant motifs of dinucleotide, trinucleotide, and tetranucleotide motifs, respectively. In summary, a wide range of candidate microsatellite markers were identified and characterized in the present study using genome survey analysis. High-quality whole genome sequence based on the "Illumina+PacBio+Hi-C" strategy is warranted for further comparative genomics and evolutionary biology studies in this species.
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