Evidence map›Paper›PMID 32086516›Full record

ArticleNucleic acids research2020

The fungal CCAAT-binding complex and HapX display highly variable but evolutionary conserved synergetic promoter-specific DNA recognition.

Takanori Furukawa, Mareike Thea Scheven, Matthias Misslinger, Can Zhao, Sandra Hoefgen, Fabio Gsaller, Jeffrey Lau, Christoph Jöchl, Ian Donaldson, Vito Valiante and 4 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
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  6. Engineering of Global Transcriptional Regulators (GTRs) inJournal of fungi (Basel, Switzerland) · 2025
    Review
  7. Review
  8. The transcriptional regulatorCurrent research in microbial sciences · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Takanori FurukawaManchester Fungal Infection Group, Institute of Inflammation and Repair, University of Manchester, Manchester M13 9PL, UK.
Mareike Thea SchevenDepartment of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology (HKI), Jena D-07745, Germany.
Matthias MisslingerDivision of Molecular Biology/Biocenter, Innsbruck Medical University, Innsbruck, A-6020, Austria.
Can ZhaoManchester Fungal Infection Group, Institute of Inflammation and Repair, University of Manchester, Manchester M13 9PL, UK.
Sandra HoefgenLeibniz Research Group Biobricks of Microbial Natural Product Syntheses, Leibniz Institute for Natural Product Research and Infection Biology (HKI), Jena D-07745, Germany.
Fabio GsallerDivision of Molecular Biology/Biocenter, Innsbruck Medical University, Innsbruck, A-6020, Austria.
Jeffrey LauManchester Fungal Infection Group, Institute of Inflammation and Repair, University of Manchester, Manchester M13 9PL, UK.
Christoph JöchlDivision of Molecular Biology/Biocenter, Innsbruck Medical University, Innsbruck, A-6020, Austria.
Ian DonaldsonManchester Fungal Infection Group, Institute of Inflammation and Repair, University of Manchester, Manchester M13 9PL, UK.
Vito ValianteLeibniz Research Group Biobricks of Microbial Natural Product Syntheses, Leibniz Institute for Natural Product Research and Infection Biology (HKI), Jena D-07745, Germany.
Axel A BrakhageDepartment of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology (HKI), Jena D-07745, Germany.
Michael J BromleyManchester Fungal Infection Group, Institute of Inflammation and Repair, University of Manchester, Manchester M13 9PL, UK.
Hubertus HaasDivision of Molecular Biology/Biocenter, Innsbruck Medical University, Innsbruck, A-6020, Austria.
Peter HortschanskyDepartment of Molecular and Applied Microbiology, Leibniz Institute for Natural Product Research and Infection Biology (HKI), Jena D-07745, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

To sustain iron homeostasis, microorganisms have evolved fine-tuned mechanisms for uptake, storage and detoxification of the essential metal iron. In the human pathogen Aspergillus fumigatus, the fungal-specific bZIP-type transcription factor HapX coordinates adaption to both iron starvation and iron excess and is thereby crucial for virulence. Previous studies indicated that a HapX homodimer interacts with the CCAAT-binding complex (CBC) to cooperatively bind bipartite DNA motifs; however, the mode of HapX-DNA recognition had not been resolved. Here, combination of in vivo (genetics and ChIP-seq), in vitro (surface plasmon resonance) and phylogenetic analyses identified an astonishing plasticity of CBC:HapX:DNA interaction. DNA motifs recognized by the CBC:HapX protein complex comprise a bipartite DNA binding site 5'-CSAATN12RWT-3' and an additional 5'-TKAN-3' motif positioned 11-23 bp downstream of the CCAAT motif, i.e. occasionally overlapping the 3'-end of the bipartite binding site. Phylogenetic comparison taking advantage of 20 resolved Aspergillus species genomes revealed that DNA recognition by the CBC:HapX complex shows promoter-specific cross-species conservation rather than regulon-specific conservation. Moreover, we show that CBC:HapX interaction is absolutely required for all known functions of HapX. The plasticity of the CBC:HapX:DNA interaction permits fine tuning of CBC:HapX binding specificities that could support adaptation of pathogens to their host niches.

Indexed as

Promoter Regions, GeneticAspergillus fumigatusAT Rich SequenceBasic-Leucine Zipper Transcription FactorsBinding SitesCCAAT-Binding FactorDNA, FungalEvolution, MolecularFungal ProteinsIronMutationNucleotide MotifsProtein BindingProtein DomainsRegulonSiderophoresBasic-Leucine Zipper Transcription FactorsCCAAT-Binding FactorDNA, FungalFungal ProteinsIronSiderophoresTranscription Factors

Identifiers

PMID32086516
PMCPMC7144946

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.