Evidence map›Paper›PMID 32084241›Full record

ArticlePloS one2020

Using comparative genomics to understand molecular features of carbapenem-resistant Acinetobacter baumannii from South Korea causing invasive infections and their clinical implications.

Min Hyung Kim, Haeyoung Jeong, Young Mi Sim, Soohyun Lee, Dongeun Yong, Choong-Min Ryu, Jun Yong Choi

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Genomic Epidemiology of Carbapenem-ResistantAntibiotics (Basel, Switzerland) · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. The Changes in Epidemiology of Imipenem-ResistantJournal of Korean medical science · 2022
    Article
  9. Whole-genome analysis of carbapenem-resistantComputational and structural biotechnology journal · 2022
    Article
  10. Article
  11. Review
  12. Antibiotic Resistance and Genotypes of Nosocomial Strains ofAntibiotics (Basel, Switzerland) · 2021
    Article
  13. Analysis ofInternational journal of molecular sciences · 2021
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Min Hyung KimDepartment of Internal Medicine, Bundang Jesaeng Hospital, Seongam, Gyeonggi, South Korea.
Haeyoung JeongInfectious Disease Research Center, KRIBB, Daejeon, South Korea.
Young Mi SimInfectious Disease Research Center, KRIBB, Daejeon, South Korea.
Soohyun LeeInfectious Disease Research Center, KRIBB, Daejeon, South Korea.
Dongeun YongDepartment of Laboratory Medicine and Research Institute of antimicrobial resistance, Yonsei University College of Medicine, Seoul, South Korea.
Choong-Min RyuInfectious Disease Research Center, KRIBB, Daejeon, South Korea.
Jun Yong ChoiDepartment of Internal Medicine and AIDS Research Institute, Yonsei University College of Medicine, Seoul, South Korea.ORCID 0000-0002-2775-3315
Korea Center for Disease Control and Prevention · KRYonsei University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Acinetobacter baumannii is a highly potent nosocomial pathogen that is associated with increased in-hospital mortality. Here, we investigated the changes in molecular characteristics of carbapenem-resistant A. baumannii (CRAB) isolated from the blood samples of patients admitted to a tertiary hospital in South Korea from January 2009 to July 2015. Whole genome sequencing using the Illumina MiSeq platform and multi-locus sequence typing (MLST) were performed for 98 CRAB clinical isolates. In silico analyses for the prediction of antimicrobial resistance and virulence factor genes were performed. Plasmid sequences, including complete forms, were reconstructed from the sequence reads. Epidemiologic data were collected from the hospital database. MLST using the Oxford scheme revealed 10 sequence types of CRAB, of which ST191 was the dominant type (n = 59). Although blaOXA-23 was shared by most analysed strains, the compositions of antimicrobial resistance determinants differed among sequence types. ST447 and ST451/ST1809 with a few resistance genes were isolated during the later years of the study period. The number of virulence genes increased, while that of ST191 did not change significantly over the investigation period. Intriguingly MLST types, compositions of antimicrobial resistance genes, and virulence genes had no association with clinical outcomes of CRAB bacteraemia. In conclusion, active changes in or accumulations of antimicrobial resistance determinants and virulence genes in CRAB were not observed during the research period. Molecular characteristics of CRAB had no association with clinical outcomes of CRAB bacteraemia.

Indexed as

Acinetobacter baumanniiAcinetobacter InfectionsBacterial ProteinsCarbapenemsCross InfectionDrug Resistance, BacterialFemaleGenomicsHumansMaleMiddle AgedMultilocus Sequence TypingRepublic of KoreaVirulence FactorsBacterial ProteinsCarbapenemsVirulence Factors

Identifiers

PMID32084241
PMCPMC7034955
OpenAlexW3008725672

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.