Evidence map›Paper›PMID 32084166›Full record

ArticlePloS one2020

ChronoMID-Cross-modal neural networks for 3-D temporal medical imaging data.

Alexander G Rakowski, Petar Veličković, Enrico Dall'Ara, Pietro Liò

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alexander G RakowskiComputer Laboratory, University of Cambridge, Cambridge, Cambs, England, United Kingdom.ORCID 0000-0002-7512-4169
Petar VeličkovićComputer Laboratory, University of Cambridge, Cambridge, Cambs, England, United Kingdom.
Enrico Dall'AraDepartment of Oncology & Metabolism, University of Sheffield, Sheffield, South Yorkshire, England, United Kingdom.
Pietro LiòComputer Laboratory, University of Cambridge, Cambridge, Cambs, England, United Kingdom.

Funding

National Centre for the Replacement, Refinement and Reduction of Animals in Research NC/R001073/1
6 · The paper itself

Abstract

ChronoMID-neural networks for temporally-varying, hence Chrono, Medical Imaging Data-makes the novel application of cross-modal convolutional neural networks (X-CNNs) to the medical domain. In this paper, we present multiple approaches for incorporating temporal information into X-CNNs and compare their performance in a case study on the classification of abnormal bone remodelling in mice. Previous work developing medical models has predominantly focused on either spatial or temporal aspects, but rarely both. Our models seek to unify these complementary sources of information and derive insights in a bottom-up, data-driven approach. As with many medical datasets, the case study herein exhibits deep rather than wide data; we apply various techniques, including extensive regularisation, to account for this. After training on a balanced set of approximately 70000 images, two of the models-those using difference maps from known reference points-outperformed a state-of-the-art convolutional neural network baseline by over 30pp (> 99% vs. 68.26%) on an unseen, balanced validation set comprising around 20000 images. These models are expected to perform well with sparse data sets based on both previous findings with X-CNNs and the representations of time used, which permit arbitrarily large and irregular gaps between data points. Our results highlight the importance of identifying a suitable description of time for a problem domain, as unsuitable descriptors may not only fail to improve a model, they may in fact confound it.

Indexed as

AnimalsBone RemodelingData Interpretation, StatisticalDeep LearningFemaleImaging, Three-DimensionalMachine LearningMiceMice, Inbred C57BLModels, TheoreticalNeural Networks, ComputerSpatio-Temporal AnalysisX-Ray Microtomography

Identifiers

PMID32084166
PMCPMC7034884

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.