Evidence map›Paper›PMID 32083666›Full record

ArticleNucleic acids research2020

The hTERT core promoter forms three parallel G-quadruplexes.

Robert C Monsen, Lynn DeLeeuw, William L Dean, Robert D Gray, T Michael Sabo, Srinivas Chakravarthy, Jonathan B Chaires, John O Trent

Abstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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  8. Telomeres and telomerase in Sarcoma disease and therapy.International journal of medical sciences · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Robert C MonsenDepartment of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY 40202, USA.
Lynn DeLeeuwJames Graham Brown Cancer Center, University of Louisville, Louisville, KY 40202, USA.
William L DeanJames Graham Brown Cancer Center, University of Louisville, Louisville, KY 40202, USA.
Robert D GrayJames Graham Brown Cancer Center, University of Louisville, Louisville, KY 40202, USA.
T Michael SaboDepartment of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY 40202, USA.
Srinivas ChakravarthyThe Biophysics Collaborative Access Team (BioCAT), Department of Biological Chemical and Physical Sciences, Illinois Institute of Technology, Chicago, IL 60616, USA.
Jonathan B ChairesDepartment of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY 40202, USA.
John O TrentDepartment of Biochemistry & Molecular Genetics, University of Louisville, Louisville, KY 40202, USA.

Funding

Time resolved SAXS studies on the RP2/Arl3 complex pp.484-485P41GM103622 · NIGMS · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2012 to 2020
$11.9M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Targeting Nucleic Acids with an Integrated Vitural and Actual ScreenR01GM077422 · NIGMS · UNIVERSITY OF LOUISVILLE · PI CHAIRES, JONATHAN B., TRENT, JOHN O · 2007 to 2020
$3.7M
Advanced Pixel Array Detector for Time-Resolved SAXS and Fiber DiffractionS10OD018090 · OD · ILLINOIS INSTITUTE OF TECHNOLOGY · PI IRVING, THOMAS C · 2014 to 2014
$529k
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS P41 GM103622NIGMS NIH HHS R01 GM077422NIH HHS S10 OD018090
6 · The paper itself

Abstract

The structure of the 68 nt sequence with G-quadruplex forming potential within the hTERT promoter is disputed. One model features a structure with three stacked parallel G-quadruplex units, while another features an unusual duplex hairpin structure adjoined to two stacked parallel and antiparallel quadruplexes. We report here the results of an integrated structural biology study designed to distinguish between these possibilities. As part of our study, we designed a sequence with an optimized hairpin structure and show that its biophysical and biochemical properties are inconsistent with the structure formed by the hTERT wild-type sequence. By using circular dichroism, thermal denaturation, nuclear magnetic resonance spectroscopy, analytical ultracentrifugation, small-angle X-ray scattering, molecular dynamics simulations and a DNase I cleavage assay we found that the wild type hTERT core promoter folds into a stacked, three-parallel G-quadruplex structure. The hairpin structure is inconsistent with all of our experimental data obtained with the wild-type sequence. All-atom models for both structures were constructed using molecular dynamics simulations. These models accurately predicted the experimental hydrodynamic properties measured for each structure. We found with certainty that the wild-type hTERT promoter sequence does not form a hairpin structure in solution, but rather folds into a compact stacked three-G-quadruplex conformation.

Indexed as

G-QuadruplexesPromoter Regions, GeneticBase SequenceCircular DichroismDNAHumansMolecular Dynamics SimulationNuclear Magnetic Resonance, BiomolecularNucleic Acid DenaturationScattering, Small AngleTelomeraseX-Ray DiffractionDNATelomeraseTERT protein, human

Identifiers

PMID32083666
PMCPMC7261196

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.