Evidence map›Paper›PMID 32083090›Full record

ReviewFrontiers in medicine2020

New Developments in Transcriptomic Analysis of Synovial Tissue.

Hayley L Carr, Jason D Turner, Triin Major, Dagmar Scheel-Toellner, Andrew Filer

Abstract readReview
In one paragraph

Review in Frontiers in medicine, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Hayley L CarrInstitute for Inflammation and Ageing, University of Birmingham, Birmingham, United Kingdom.
Jason D TurnerInstitute for Inflammation and Ageing, University of Birmingham, Birmingham, United Kingdom.
Triin MajorInstitute for Inflammation and Ageing, University of Birmingham, Birmingham, United Kingdom.
Dagmar Scheel-ToellnerInstitute for Inflammation and Ageing, University of Birmingham, Birmingham, United Kingdom.
Andrew FilerInstitute for Inflammation and Ageing, University of Birmingham, Birmingham, United Kingdom.

Funding

Medical Research Council MC_PC_16037Medical Research Council MR/M007669/1Medical Research Council MR/P021220/1
6 · The paper itself

Abstract

Transcriptomic technologies are constantly changing and improving, resulting in an ever increasing understanding of gene expression in health and disease. These technologies have been used to investigate the pathological changes occurring in the joints of rheumatoid arthritis patients, leading to discoveries of disease mechanisms, and novel potential therapeutic targets. Microarrays were initially used on both whole tissue and cell subsets to investigate research questions, with bulk RNA sequencing allowing for further elaboration of these findings. A key example is the classification of pathotypes in rheumatoid arthritis using RNA sequencing that had previously been discovered using microarray and histology. Single-cell sequencing has now delivered a step change in understanding of the diversity and function of subpopulations of cells, in particular synovial fibroblasts. Future technologies, such as high resolution spatial transcriptomics, will enable step changes integrating single cell transcriptomic and geographic data to provide an integrated understanding of synovial pathology.

Indexed as

fibroblastmicroarraypathotypesequencingsingle-cellstratificationsynoviumtranscriptomics

Identifiers

PMID32083090
PMCPMC7005068

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.