Evidence map›Paper›PMID 32083020›Full record

ArticleFrontiers in cellular and infection microbiology2020

Rapid and Accurate Species Identification of Mitis Group Streptococci Using the MinION Nanopore Sequencer.

Kazuo Imai, Rina Nemoto, Masahiro Kodana, Norihito Tarumoto, Jun Sakai, Toru Kawamura, Kenji Ikebuchi, Kotaro Mitsutake, Takashi Murakami, Shigefumi Maesaki and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Insights into the role ofFrontiers in cellular and infection microbiology · 2024
    Review
  7. Article
  8. Article
  9. Article
  10. Antibiotics (Basel, Switzerland) · 2021
    Article
  11. Review
  12. Evaluation ofFrontiers in microbiology · 2021
    Article
  13. Identification of Streptococcus pneumoniae and other Mitis streptococci: importance of molecular methods.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Kazuo ImaiDepartment of Infectious Disease and Infection Control, Saitama Medical University, Saitama, Japan.
Rina NemotoDepartment of Microbiology, Saitama Medical University, Saitama, Japan.
Masahiro KodanaDepartment of Laboratory Medicine, Saitama Medical University, Saitama, Japan.
Norihito TarumotoDepartment of Infectious Disease and Infection Control, Saitama Medical University, Saitama, Japan.
Jun SakaiDepartment of Infectious Disease and Infection Control, Saitama Medical University, Saitama, Japan.
Toru KawamuraDepartment of Laboratory Medicine, Saitama Medical University, Saitama, Japan.
Kenji IkebuchiDepartment of Laboratory Medicine, Saitama Medical University, Saitama, Japan.
Kotaro MitsutakeDepartment of Infectious Diseases and Infection Control, International Medical Center, Saitama Medical University, Saitama, Japan.
Takashi MurakamiCenter for Clinical Infectious Diseases and Research, Saitama Medical University, Saitama, Japan.
Shigefumi MaesakiDepartment of Infectious Disease and Infection Control, Saitama Medical University, Saitama, Japan.
Taku FujiwaraDepartment of Pediatric Dentistry, Nagasaki University Graduate School of Biomedical Sciences, Nagasaki, Japan.
Satoshi HayakawaDivision of Microbiology, Department of Pathology and Microbiology, Nihon University School of Medicine, Tokyo, Japan.
Tomonori HoshinoDivision of Pediatric Dentistry, Meikai University School of Dentistry, Sakado, Japan.
Mitsuko SekiDivision of Microbiology, Department of Pathology and Microbiology, Nihon University School of Medicine, Tokyo, Japan.
Takuya MaedaCenter for Clinical Infectious Diseases and Research, Saitama Medical University, Saitama, Japan.
Saitama Medical University · JPNihon University · JPMeikai University · JPNagasaki University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Differentiation between mitis group streptococci (MGS) bacteria in routine laboratory tests has become important for obtaining accurate epidemiological information on the characteristics of MGS and understanding their clinical significance. The most reliable method of MGS species identification is multilocus sequence analysis (MLSA) with seven house-keeping genes; however, because this method is time-consuming, it is deemed unsuitable for use in most clinical laboratories. In this study, we established a scheme for identifying 12 species of MGS (

Indexed as

Bacterial Typing TechniquesNanopore SequencingSequence Analysis, DNAGenes, BacterialGenome, BacterialHumansMouth MucosaMultilocus Sequence TypingPhylogenySpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStreptococcal InfectionsStreptococcusStreptococcus mitisStreptococcus oralisStreptococcus pneumoniaeStreptococcus sanguisKrakenMinIONmitis group streptococciwhole genome sequencingWIMP

Identifiers

PMID32083020
PMCPMC7002467
OpenAlexW3004169303

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.